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An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1 T

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ABSTRACT

Despite their ubiquity and their involvement in food spoilage, the genus Carnobacterium remains rather sparsely characterized at the genome level. Carnobacterium inhibens K1T is a member of the Carnobacteriaceae family within the class Bacilli. This strain is a Gram-positive, rod-shaped bacterium isolated from the intestine of an Atlantic salmon. The present study determined the genome sequence and annotation of Carnobacterium inhibens K1T. The genome comprised 2,748,608 bp with a G + C content of 34.85 %, which included 2621 protein-coding genes and 116 RNA genes. The strain contained five contigs corresponding to presumptive plasmids of sizes: 19,036; 24,250; 26,581; 65,272; and 65,904 bp.

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Scanning electron micrograph of Carnobacterium inhibens subsp. inhibens strain K1T. Size bar is 1 μm in length
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Fig1: Scanning electron micrograph of Carnobacterium inhibens subsp. inhibens strain K1T. Size bar is 1 μm in length

Mentions: Carnobacterium inhibens subsp. inhibens strain K1T is a motile Gram-positive rod (Fig. 1). It is a psychrophile that lacks both catalase and oxidase, does not grow on acetate containing media, but grows at pH 9 and in Trypticase Soy Broth containing up to 6 % (w/v) sodium chloride. Strain K1T is facultatively anaerobic and tryptone as a sole source of nutrient promotes growth. The most abundant cellular fatty acid of strain K1T is oleic acid (18:1cis9) [14]. Classification of strain K1T according to the MIGS recommendations published by the Genome Standards Consortium is presented in Table 1.Fig. 1


An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1 T
Scanning electron micrograph of Carnobacterium inhibens subsp. inhibens strain K1T. Size bar is 1 μm in length
© Copyright Policy - OpenAccess
Related In: Results  -  Collection

License 1 - License 2
Show All Figures
getmorefigures.php?uid=PMC5016993&req=5

Fig1: Scanning electron micrograph of Carnobacterium inhibens subsp. inhibens strain K1T. Size bar is 1 μm in length
Mentions: Carnobacterium inhibens subsp. inhibens strain K1T is a motile Gram-positive rod (Fig. 1). It is a psychrophile that lacks both catalase and oxidase, does not grow on acetate containing media, but grows at pH 9 and in Trypticase Soy Broth containing up to 6 % (w/v) sodium chloride. Strain K1T is facultatively anaerobic and tryptone as a sole source of nutrient promotes growth. The most abundant cellular fatty acid of strain K1T is oleic acid (18:1cis9) [14]. Classification of strain K1T according to the MIGS recommendations published by the Genome Standards Consortium is presented in Table 1.Fig. 1

View Article: PubMed Central - PubMed

ABSTRACT

Despite their ubiquity and their involvement in food spoilage, the genus Carnobacterium remains rather sparsely characterized at the genome level. Carnobacterium inhibens K1T is a member of the Carnobacteriaceae family within the class Bacilli. This strain is a Gram-positive, rod-shaped bacterium isolated from the intestine of an Atlantic salmon. The present study determined the genome sequence and annotation of Carnobacterium inhibens K1T. The genome comprised 2,748,608 bp with a G + C content of 34.85 %, which included 2621 protein-coding genes and 116 RNA genes. The strain contained five contigs corresponding to presumptive plasmids of sizes: 19,036; 24,250; 26,581; 65,272; and 65,904 bp.

No MeSH data available.


Related in: MedlinePlus