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Deep sequencing reveals microbiota dysbiosis of tongue coat in patients with liver carcinoma

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ABSTRACT

Liver carcinoma (LC) is a common malignancy worldwide, associated with high morbidity and mortality. Characterizing microbiome profiles of tongue coat may provide useful insights and potential diagnostic marker for LC patients. Herein, we are the first time to investigate tongue coat microbiome of LC patients with cirrhosis based on 16S ribosomal RNA (rRNA) gene sequencing. After strict inclusion and exclusion criteria, 35 early LC patients with cirrhosis and 25 matched healthy subjects were enrolled. Microbiome diversity of tongue coat in LC patients was significantly increased shown by Shannon, Simpson and Chao 1 indexes. Microbiome on tongue coat was significantly distinguished LC patients from healthy subjects by principal component analysis. Tongue coat microbial profiles represented 38 operational taxonomic units assigned to 23 different genera, distinguishing LC patients. Linear discriminant analysis (LDA) effect size (LEfSe) reveals significant microbial dysbiosis of tongue coats in LC patients. Strikingly, Oribacterium and Fusobacterium could distinguish LC patients from healthy subjects. LEfSe outputs show microbial gene functions related to categories of nickel/iron_transport, amino_acid_transport, energy produced system and metabolism between LC patients and healthy subjects. These findings firstly identify microbiota dysbiosis of tongue coat in LC patients, may providing novel and non-invasive potential diagnostic biomarker of LC.

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LDA scores predict gene function associated with tongue coat microbiomes in LC patients using PICRUSt.PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States. LCT, liver cancer patients tongue coat; HT, healthy subjects tongue coat.
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f7: LDA scores predict gene function associated with tongue coat microbiomes in LC patients using PICRUSt.PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States. LCT, liver cancer patients tongue coat; HT, healthy subjects tongue coat.

Mentions: We next used Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) (http://picrust.github.com)16 software to predict the abundances of gene families in the two microbiomes. The LEfSe outputs show 20 differentially abundant gene families of the LCT and HT microbiomes (Fig. 7), including those microbial gene functions related to the categories nickel/iron_transport, amino_acid_transport and energy produced system and metabolism.


Deep sequencing reveals microbiota dysbiosis of tongue coat in patients with liver carcinoma
LDA scores predict gene function associated with tongue coat microbiomes in LC patients using PICRUSt.PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States. LCT, liver cancer patients tongue coat; HT, healthy subjects tongue coat.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC5015078&req=5

f7: LDA scores predict gene function associated with tongue coat microbiomes in LC patients using PICRUSt.PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States. LCT, liver cancer patients tongue coat; HT, healthy subjects tongue coat.
Mentions: We next used Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) (http://picrust.github.com)16 software to predict the abundances of gene families in the two microbiomes. The LEfSe outputs show 20 differentially abundant gene families of the LCT and HT microbiomes (Fig. 7), including those microbial gene functions related to the categories nickel/iron_transport, amino_acid_transport and energy produced system and metabolism.

View Article: PubMed Central - PubMed

ABSTRACT

Liver carcinoma (LC) is a common malignancy worldwide, associated with high morbidity and mortality. Characterizing microbiome profiles of tongue coat may provide useful insights and potential diagnostic marker for LC patients. Herein, we are the first time to investigate tongue coat microbiome of LC patients with cirrhosis based on 16S ribosomal RNA (rRNA) gene sequencing. After strict inclusion and exclusion criteria, 35 early LC patients with cirrhosis and 25 matched healthy subjects were enrolled. Microbiome diversity of tongue coat in LC patients was significantly increased shown by Shannon, Simpson and Chao 1 indexes. Microbiome on tongue coat was significantly distinguished LC patients from healthy subjects by principal component analysis. Tongue coat microbial profiles represented 38 operational taxonomic units assigned to 23 different genera, distinguishing LC patients. Linear discriminant analysis (LDA) effect size (LEfSe) reveals significant microbial dysbiosis of tongue coats in LC patients. Strikingly, Oribacterium and Fusobacterium could distinguish LC patients from healthy subjects. LEfSe outputs show microbial gene functions related to categories of nickel/iron_transport, amino_acid_transport, energy produced system and metabolism between LC patients and healthy subjects. These findings firstly identify microbiota dysbiosis of tongue coat in LC patients, may providing novel and non-invasive potential diagnostic biomarker of LC.

No MeSH data available.


Related in: MedlinePlus