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Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1.

Felux AK, Franchini P, Schleheck D - Stand Genomic Sci (2015)

Bottom Line: Pseudomonas putida SQ1 was isolated for its ability to utilize the plant sugar sulfoquinovose (6-deoxy-6-sulfoglucose) for growth, in order to define its SQ-degradation pathway and the enzymes and genes involved.Here we describe the features of the organism, together with its draft genome sequence and annotation.The draft genome comprises 5,328,888 bp and is predicted to encode 5,824 protein-coding genes; the overall G + C content is 61.58 %.

View Article: PubMed Central - PubMed

Affiliation: Department of Biology, University of Konstanz, Konstanz, Germany ; Konstanz Research School Chemical Biology, University of Konstanz, Konstanz, Germany.

ABSTRACT
Pseudomonas putida SQ1 was isolated for its ability to utilize the plant sugar sulfoquinovose (6-deoxy-6-sulfoglucose) for growth, in order to define its SQ-degradation pathway and the enzymes and genes involved. Here we describe the features of the organism, together with its draft genome sequence and annotation. The draft genome comprises 5,328,888 bp and is predicted to encode 5,824 protein-coding genes; the overall G + C content is 61.58 %. The genome annotation is being used for identification of proteins that might be involved in SQ degradation by peptide fingerprinting-mass spectrometry.

No MeSH data available.


Related in: MedlinePlus

Scanning electron micrographs of Pseudomonas putida SQ1. Cells derived from a liquid culture (LB medium)
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Fig1: Scanning electron micrographs of Pseudomonas putida SQ1. Cells derived from a liquid culture (LB medium)

Mentions: P. putida SQ1 is a rod-shaped (Fig. 1), motile, Gram-negative bacterium that grows aerobically in complex medium (e.g. LB-medium), or prototrophically in mineral-salts medium with a single carbon source (e.g., succinate, glucose, SQ). Strain SQ1 grows overnight on LB-agar plates and forms beige-whitish, smooth colonies (Table 1). Pseudomonas putida SQ1 has been deposited in the Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures under reference number DSM 100120.Fig. 1


Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1.

Felux AK, Franchini P, Schleheck D - Stand Genomic Sci (2015)

Scanning electron micrographs of Pseudomonas putida SQ1. Cells derived from a liquid culture (LB medium)
© Copyright Policy - open-access
Related In: Results  -  Collection

License 1 - License 2
Show All Figures
getmorefigures.php?uid=PMC4940961&req=5

Fig1: Scanning electron micrographs of Pseudomonas putida SQ1. Cells derived from a liquid culture (LB medium)
Mentions: P. putida SQ1 is a rod-shaped (Fig. 1), motile, Gram-negative bacterium that grows aerobically in complex medium (e.g. LB-medium), or prototrophically in mineral-salts medium with a single carbon source (e.g., succinate, glucose, SQ). Strain SQ1 grows overnight on LB-agar plates and forms beige-whitish, smooth colonies (Table 1). Pseudomonas putida SQ1 has been deposited in the Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures under reference number DSM 100120.Fig. 1

Bottom Line: Pseudomonas putida SQ1 was isolated for its ability to utilize the plant sugar sulfoquinovose (6-deoxy-6-sulfoglucose) for growth, in order to define its SQ-degradation pathway and the enzymes and genes involved.Here we describe the features of the organism, together with its draft genome sequence and annotation.The draft genome comprises 5,328,888 bp and is predicted to encode 5,824 protein-coding genes; the overall G + C content is 61.58 %.

View Article: PubMed Central - PubMed

Affiliation: Department of Biology, University of Konstanz, Konstanz, Germany ; Konstanz Research School Chemical Biology, University of Konstanz, Konstanz, Germany.

ABSTRACT
Pseudomonas putida SQ1 was isolated for its ability to utilize the plant sugar sulfoquinovose (6-deoxy-6-sulfoglucose) for growth, in order to define its SQ-degradation pathway and the enzymes and genes involved. Here we describe the features of the organism, together with its draft genome sequence and annotation. The draft genome comprises 5,328,888 bp and is predicted to encode 5,824 protein-coding genes; the overall G + C content is 61.58 %. The genome annotation is being used for identification of proteins that might be involved in SQ degradation by peptide fingerprinting-mass spectrometry.

No MeSH data available.


Related in: MedlinePlus