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'Bacteroides mediterraneensis' sp. nov., a new human-associated bacterium isolated from ileum specimen.

Mailhe M, Ricaboni D, Vitton V, Fournier PE, Saber K, Raoult D - New Microbes New Infect (2016)

Bottom Line: We report here the main characteristics of 'Bacteroides mediterraneensis' strain Marseille-P2644(T) (CSURP2644) that was isolated from the stored samples of gut.

View Article: PubMed Central - PubMed

Affiliation: Aix-Marseille Université, URMITE, UM63, CNRS7278, IRD198, Inserm 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Marseille, France.

ABSTRACT
We report here the main characteristics of 'Bacteroides mediterraneensis' strain Marseille-P2644(T) (CSURP2644) that was isolated from the stored samples of gut.

No MeSH data available.


Related in: MedlinePlus

Phylogenetic tree showing the position of ‘Bacteroides mediterraneensis’ strain Marseille-P2644T relative to other phylogenetically close members of the family Bacteroidaceae. GenBank Accession numbers are indicated in parentheses. Sequences were aligned using CLUSTALW, and phylogenetic inferences were obtained using the maximum-likelihood method within the MEGA software. Numbers at the nodes are percentages of bootstrap values obtained by repeating the analysis 500 times to generate a majority consensus tree. Only the bootstraps that score ≥95% were retained. The scale bar indicates a 2% nucleotide sequence divergence.
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fig1: Phylogenetic tree showing the position of ‘Bacteroides mediterraneensis’ strain Marseille-P2644T relative to other phylogenetically close members of the family Bacteroidaceae. GenBank Accession numbers are indicated in parentheses. Sequences were aligned using CLUSTALW, and phylogenetic inferences were obtained using the maximum-likelihood method within the MEGA software. Numbers at the nodes are percentages of bootstrap values obtained by repeating the analysis 500 times to generate a majority consensus tree. Only the bootstraps that score ≥95% were retained. The scale bar indicates a 2% nucleotide sequence divergence.

Mentions: The complete 16S rRNA gene was sequenced using fD1-rP2 primers as previously described [5], using a 3130-XL sequencer (Applied Biosciences, Saint Aubin, France). Strain Marseille-P2644 exhibited a 95.1% sequence similarity [6] with Bacteroides coprocola strain ABIY 20521 (DSM 17136, GenBank Accession no. AB200224), the phylogenetically closest species with standing nomenclature (Fig. 1), which putatively classifies it as a member of the genus Bacteroides within the family Bacteroidaceae in the phylum Bacteroidetes. Bacteroides coprocola strain ABIY 20521 was identified for the first time in 2005, from the human faeces of three healthy Japanese individuals [7].


'Bacteroides mediterraneensis' sp. nov., a new human-associated bacterium isolated from ileum specimen.

Mailhe M, Ricaboni D, Vitton V, Fournier PE, Saber K, Raoult D - New Microbes New Infect (2016)

Phylogenetic tree showing the position of ‘Bacteroides mediterraneensis’ strain Marseille-P2644T relative to other phylogenetically close members of the family Bacteroidaceae. GenBank Accession numbers are indicated in parentheses. Sequences were aligned using CLUSTALW, and phylogenetic inferences were obtained using the maximum-likelihood method within the MEGA software. Numbers at the nodes are percentages of bootstrap values obtained by repeating the analysis 500 times to generate a majority consensus tree. Only the bootstraps that score ≥95% were retained. The scale bar indicates a 2% nucleotide sequence divergence.
© Copyright Policy - CC BY-NC-ND
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4930333&req=5

fig1: Phylogenetic tree showing the position of ‘Bacteroides mediterraneensis’ strain Marseille-P2644T relative to other phylogenetically close members of the family Bacteroidaceae. GenBank Accession numbers are indicated in parentheses. Sequences were aligned using CLUSTALW, and phylogenetic inferences were obtained using the maximum-likelihood method within the MEGA software. Numbers at the nodes are percentages of bootstrap values obtained by repeating the analysis 500 times to generate a majority consensus tree. Only the bootstraps that score ≥95% were retained. The scale bar indicates a 2% nucleotide sequence divergence.
Mentions: The complete 16S rRNA gene was sequenced using fD1-rP2 primers as previously described [5], using a 3130-XL sequencer (Applied Biosciences, Saint Aubin, France). Strain Marseille-P2644 exhibited a 95.1% sequence similarity [6] with Bacteroides coprocola strain ABIY 20521 (DSM 17136, GenBank Accession no. AB200224), the phylogenetically closest species with standing nomenclature (Fig. 1), which putatively classifies it as a member of the genus Bacteroides within the family Bacteroidaceae in the phylum Bacteroidetes. Bacteroides coprocola strain ABIY 20521 was identified for the first time in 2005, from the human faeces of three healthy Japanese individuals [7].

Bottom Line: We report here the main characteristics of 'Bacteroides mediterraneensis' strain Marseille-P2644(T) (CSURP2644) that was isolated from the stored samples of gut.

View Article: PubMed Central - PubMed

Affiliation: Aix-Marseille Université, URMITE, UM63, CNRS7278, IRD198, Inserm 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Marseille, France.

ABSTRACT
We report here the main characteristics of 'Bacteroides mediterraneensis' strain Marseille-P2644(T) (CSURP2644) that was isolated from the stored samples of gut.

No MeSH data available.


Related in: MedlinePlus