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Mycobacterium avium Subspecies paratuberculosis Infection Modifies Gut Microbiota under Different Dietary Conditions in a Rabbit Model.

Arrazuria R, Elguezabal N, Juste RA, Derakhshani H, Khafipour E - Front Microbiol (2016)

Bottom Line: Mycobacterium avium subspecies paratuberculosis (MAP) the causative agent of paratuberculosis, produces a chronic granulomatous inflammation of the gastrointestinal tract of ruminants.A lower abundance of Proteobacteria in the cecal content of infected animals fed the high fiber diet and also lower abundance of Bacteroidetes in the sacculus rotundus of infected animals fed the regular diet were observed.Based on OPLS-DA analysis, we observed that some bacteria repeatedly appear to be positively associated with infection in different samples under different diets (families Dehalobacteriaceae, Coriobacteriaceae, and Mogibacteriaceae; genus Anaerofustis).

View Article: PubMed Central - PubMed

Affiliation: Department of Animal Health, NEIKER-Instituto Vasco de Investigación y Desarrollo Agrario Derio, Spain.

ABSTRACT
Mycobacterium avium subspecies paratuberculosis (MAP) the causative agent of paratuberculosis, produces a chronic granulomatous inflammation of the gastrointestinal tract of ruminants. It has been recently suggested that MAP infection may be associated with dysbiosis of intestinal microbiota in ruminants. Since diet is one of the key factors affecting the balance of microbial populations in the digestive tract, we intended to evaluate the effect of MAP infection in a rabbit model fed a regular or high fiber diet during challenge. The composition of microbiota of the cecal content and the sacculus rotundus was studied in 20 New Zealand white female rabbits. The extracted DNA was subjected to paired-end Illumina sequencing of the V3-V4 hypervariable region of the 16S rRNA gene for microbiota analysis. Microbial richness (Chao1) in the cecal content was significantly increased by MAP infection in regular diet rabbits (p = 0.0043) and marginally increased (p = 0.0503) in the high fiber group. Analysis of beta-diversity showed that MAP infection produces deeper changes in the microbiota of sacculus rotundus than in the cecal content. A lower abundance of Proteobacteria in the cecal content of infected animals fed the high fiber diet and also lower abundance of Bacteroidetes in the sacculus rotundus of infected animals fed the regular diet were observed. Based on OPLS-DA analysis, we observed that some bacteria repeatedly appear to be positively associated with infection in different samples under different diets (families Dehalobacteriaceae, Coriobacteriaceae, and Mogibacteriaceae; genus Anaerofustis). The same phenomenon was observed with some of the bacteria negatively associated with MAP infection (genera Anaerostipes and Coprobacillus). However, other groups of bacteria (Enterobacteriaceae family and ML615J-28 order) were positively associated with infection in some circumstances and negatively associated with infection in others. Data demonstrate that MAP infection and diet changes do interact and result in shifts in the microbiota of the cecal content and sacculus rotundus of rabbits.

No MeSH data available.


Related in: MedlinePlus

Principal coordinates analysis (PCoA) of unweighted UniFrac distances of samples from sacculus rotundus. Significant p-value = 0.032 for Infected vs. non-infected comparison was obtained from PERMANOVA.
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Figure 6: Principal coordinates analysis (PCoA) of unweighted UniFrac distances of samples from sacculus rotundus. Significant p-value = 0.032 for Infected vs. non-infected comparison was obtained from PERMANOVA.

Mentions: An average of 26,900 (SD = 10,284) of high quality sequences were obtained from sacculus rotundus samples. There were no significant differences in richness (Chao1 index), or other alpha-diversity indices (Shannon and Simpson) when infected and non-infected animals were compared (Figure 5). The beta-diversity analysis of UniFrac distances revealed differences between infected and non-infected animals in both weighted (p = 0.048) and weighted (p = 0.032) measures (Figures 6 and 7). In this lymphoid tissue, 7 bacteria phyla and 63 bacteria genera were identified.


Mycobacterium avium Subspecies paratuberculosis Infection Modifies Gut Microbiota under Different Dietary Conditions in a Rabbit Model.

Arrazuria R, Elguezabal N, Juste RA, Derakhshani H, Khafipour E - Front Microbiol (2016)

Principal coordinates analysis (PCoA) of unweighted UniFrac distances of samples from sacculus rotundus. Significant p-value = 0.032 for Infected vs. non-infected comparison was obtained from PERMANOVA.
© Copyright Policy
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4815054&req=5

Figure 6: Principal coordinates analysis (PCoA) of unweighted UniFrac distances of samples from sacculus rotundus. Significant p-value = 0.032 for Infected vs. non-infected comparison was obtained from PERMANOVA.
Mentions: An average of 26,900 (SD = 10,284) of high quality sequences were obtained from sacculus rotundus samples. There were no significant differences in richness (Chao1 index), or other alpha-diversity indices (Shannon and Simpson) when infected and non-infected animals were compared (Figure 5). The beta-diversity analysis of UniFrac distances revealed differences between infected and non-infected animals in both weighted (p = 0.048) and weighted (p = 0.032) measures (Figures 6 and 7). In this lymphoid tissue, 7 bacteria phyla and 63 bacteria genera were identified.

Bottom Line: Mycobacterium avium subspecies paratuberculosis (MAP) the causative agent of paratuberculosis, produces a chronic granulomatous inflammation of the gastrointestinal tract of ruminants.A lower abundance of Proteobacteria in the cecal content of infected animals fed the high fiber diet and also lower abundance of Bacteroidetes in the sacculus rotundus of infected animals fed the regular diet were observed.Based on OPLS-DA analysis, we observed that some bacteria repeatedly appear to be positively associated with infection in different samples under different diets (families Dehalobacteriaceae, Coriobacteriaceae, and Mogibacteriaceae; genus Anaerofustis).

View Article: PubMed Central - PubMed

Affiliation: Department of Animal Health, NEIKER-Instituto Vasco de Investigación y Desarrollo Agrario Derio, Spain.

ABSTRACT
Mycobacterium avium subspecies paratuberculosis (MAP) the causative agent of paratuberculosis, produces a chronic granulomatous inflammation of the gastrointestinal tract of ruminants. It has been recently suggested that MAP infection may be associated with dysbiosis of intestinal microbiota in ruminants. Since diet is one of the key factors affecting the balance of microbial populations in the digestive tract, we intended to evaluate the effect of MAP infection in a rabbit model fed a regular or high fiber diet during challenge. The composition of microbiota of the cecal content and the sacculus rotundus was studied in 20 New Zealand white female rabbits. The extracted DNA was subjected to paired-end Illumina sequencing of the V3-V4 hypervariable region of the 16S rRNA gene for microbiota analysis. Microbial richness (Chao1) in the cecal content was significantly increased by MAP infection in regular diet rabbits (p = 0.0043) and marginally increased (p = 0.0503) in the high fiber group. Analysis of beta-diversity showed that MAP infection produces deeper changes in the microbiota of sacculus rotundus than in the cecal content. A lower abundance of Proteobacteria in the cecal content of infected animals fed the high fiber diet and also lower abundance of Bacteroidetes in the sacculus rotundus of infected animals fed the regular diet were observed. Based on OPLS-DA analysis, we observed that some bacteria repeatedly appear to be positively associated with infection in different samples under different diets (families Dehalobacteriaceae, Coriobacteriaceae, and Mogibacteriaceae; genus Anaerofustis). The same phenomenon was observed with some of the bacteria negatively associated with MAP infection (genera Anaerostipes and Coprobacillus). However, other groups of bacteria (Enterobacteriaceae family and ML615J-28 order) were positively associated with infection in some circumstances and negatively associated with infection in others. Data demonstrate that MAP infection and diet changes do interact and result in shifts in the microbiota of the cecal content and sacculus rotundus of rabbits.

No MeSH data available.


Related in: MedlinePlus