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Draft genome sequence of Acidithiobacillus ferrooxidans YQH-1.

Yan L, Zhang S, Wang W, Hu H, Wang Y, Yu G, Chen P - Genom Data (2015)

Bottom Line: Acidithiobacillus ferrooxidans YQH-1 is a moderate acidophilic bacterium isolated from a river in a volcano of Northeast China.The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no.LJBT00000000.

View Article: PubMed Central - PubMed

Affiliation: College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Xinfeng Road No. 5, Daqing 163319, PR China.

ABSTRACT
Acidithiobacillus ferrooxidans YQH-1 is a moderate acidophilic bacterium isolated from a river in a volcano of Northeast China. Here, we describe the draft genome of strain YQH-1, which was assembled into 123 contigs containing 3,111,222 bp with a G + C content of 58.63%. A large number of genes related to carbon dioxide fixation, dinitrogen fixation, pH tolerance, heavy metal detoxification, and oxidative stress defense were detected. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no. LJBT00000000.

No MeSH data available.


Related in: MedlinePlus

Subsystem category distribution of A. ferrooxidans YQH-1 (based on RAST annotation server).
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f0005: Subsystem category distribution of A. ferrooxidans YQH-1 (based on RAST annotation server).

Mentions: RAST functional annotation predicted 183 genes were linked to carbohydrate metabolism, out of which 58 genes were predicted to be involved in carbon dioxide fixation (Fig. 1). The presence of these genes may explain the ability of YQH-1 in the natural carbon cycle. A. ferrooxidans YQH-1 contains several genes involved in iron and sulfur metabolism, such as encapsulating protein for DyP-type peroxidase and ferritin-like protein oligomers, sulfate and thiosulfate import ATP-binding protein CysA, sulfate transport system permease protein CysW, Sulfate and thiosulfate binding protein CysP et al. (Fig. 1). They may be responsible for the oxidation of ferrous iron and reduced inorganic sulfur compounds.


Draft genome sequence of Acidithiobacillus ferrooxidans YQH-1.

Yan L, Zhang S, Wang W, Hu H, Wang Y, Yu G, Chen P - Genom Data (2015)

Subsystem category distribution of A. ferrooxidans YQH-1 (based on RAST annotation server).
© Copyright Policy - CC BY-NC-ND
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4664765&req=5

f0005: Subsystem category distribution of A. ferrooxidans YQH-1 (based on RAST annotation server).
Mentions: RAST functional annotation predicted 183 genes were linked to carbohydrate metabolism, out of which 58 genes were predicted to be involved in carbon dioxide fixation (Fig. 1). The presence of these genes may explain the ability of YQH-1 in the natural carbon cycle. A. ferrooxidans YQH-1 contains several genes involved in iron and sulfur metabolism, such as encapsulating protein for DyP-type peroxidase and ferritin-like protein oligomers, sulfate and thiosulfate import ATP-binding protein CysA, sulfate transport system permease protein CysW, Sulfate and thiosulfate binding protein CysP et al. (Fig. 1). They may be responsible for the oxidation of ferrous iron and reduced inorganic sulfur compounds.

Bottom Line: Acidithiobacillus ferrooxidans YQH-1 is a moderate acidophilic bacterium isolated from a river in a volcano of Northeast China.The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no.LJBT00000000.

View Article: PubMed Central - PubMed

Affiliation: College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Xinfeng Road No. 5, Daqing 163319, PR China.

ABSTRACT
Acidithiobacillus ferrooxidans YQH-1 is a moderate acidophilic bacterium isolated from a river in a volcano of Northeast China. Here, we describe the draft genome of strain YQH-1, which was assembled into 123 contigs containing 3,111,222 bp with a G + C content of 58.63%. A large number of genes related to carbon dioxide fixation, dinitrogen fixation, pH tolerance, heavy metal detoxification, and oxidative stress defense were detected. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no. LJBT00000000.

No MeSH data available.


Related in: MedlinePlus