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Genome sequencing and annotation of Serratia sp. strain TEL.

Lephoto TE, Gray VM - Genom Data (2015)

Bottom Line: We present the annotation of the draft genome sequence of Serratia sp. strain TEL (GenBank accession number KP711410).This organism was isolated from entomopathogenic nematode Oscheius sp. strain TEL (GenBank accession number KM492926) collected from grassland soil and has a genome size of 5,000,541 bp and 542 subsystems.The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession number LDEG00000000.

View Article: PubMed Central - PubMed

Affiliation: Microbiology and Biotechnology Department, School of Molecular and Cell Biology, University of the Witwatersrand, Braamfontein 2050, Johannesburg, South Africa.

ABSTRACT
We present the annotation of the draft genome sequence of Serratia sp. strain TEL (GenBank accession number KP711410). This organism was isolated from entomopathogenic nematode Oscheius sp. strain TEL (GenBank accession number KM492926) collected from grassland soil and has a genome size of 5,000,541 bp and 542 subsystems. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession number LDEG00000000.

No MeSH data available.


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The subsystem distribution of Serratia sp. TEL based on RAST annotation.
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f0010: The subsystem distribution of Serratia sp. TEL based on RAST annotation.

Mentions: RAST identified a total of 4618 coding regions and 103 RNAs. Fig. 2 shows that the annotated genome has 119 genes potentially involved in virulence, disease and defence including 88 genes for resistance to antibiotics and toxic compounds such lysozyme inhibitors, multiple antibiotic resistance (MAR) locus, beta lactamase, copper homeostasis genes, streptothricin resistance genes, multidrug resistance efflux pumps, multidrug resistance tripartite systems found in Gram negative bacteria and resistance to chromium compounds. An example of a gene involved in stress response, virulence and defence is 16 kDa heat shock protein A and will be briefly discussed.


Genome sequencing and annotation of Serratia sp. strain TEL.

Lephoto TE, Gray VM - Genom Data (2015)

The subsystem distribution of Serratia sp. TEL based on RAST annotation.
© Copyright Policy - CC BY-NC-ND
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4664685&req=5

f0010: The subsystem distribution of Serratia sp. TEL based on RAST annotation.
Mentions: RAST identified a total of 4618 coding regions and 103 RNAs. Fig. 2 shows that the annotated genome has 119 genes potentially involved in virulence, disease and defence including 88 genes for resistance to antibiotics and toxic compounds such lysozyme inhibitors, multiple antibiotic resistance (MAR) locus, beta lactamase, copper homeostasis genes, streptothricin resistance genes, multidrug resistance efflux pumps, multidrug resistance tripartite systems found in Gram negative bacteria and resistance to chromium compounds. An example of a gene involved in stress response, virulence and defence is 16 kDa heat shock protein A and will be briefly discussed.

Bottom Line: We present the annotation of the draft genome sequence of Serratia sp. strain TEL (GenBank accession number KP711410).This organism was isolated from entomopathogenic nematode Oscheius sp. strain TEL (GenBank accession number KM492926) collected from grassland soil and has a genome size of 5,000,541 bp and 542 subsystems.The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession number LDEG00000000.

View Article: PubMed Central - PubMed

Affiliation: Microbiology and Biotechnology Department, School of Molecular and Cell Biology, University of the Witwatersrand, Braamfontein 2050, Johannesburg, South Africa.

ABSTRACT
We present the annotation of the draft genome sequence of Serratia sp. strain TEL (GenBank accession number KP711410). This organism was isolated from entomopathogenic nematode Oscheius sp. strain TEL (GenBank accession number KM492926) collected from grassland soil and has a genome size of 5,000,541 bp and 542 subsystems. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession number LDEG00000000.

No MeSH data available.


Related in: MedlinePlus