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Genome sequencing and annotation of Stenotrophomonas sp. SAM8.

Selim S, Hassan S, Hagagy N - Genom Data (2015)

Bottom Line: The draft genome size is 3,665,538 bp with a G + C content of 67.2% and contains 6 rRNA sequence (single copies of 5S, 16S & 23S rRNA).The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no.LDAV00000000.

View Article: PubMed Central - PubMed

Affiliation: Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, Aljouf University, Sakaka, P.O. Box 2014, Saudi Arabia ; Microbiology and Botany Department, Faculty of Science, Suez Canal University, Ismailia, P.O. Box 41522, Egypt.

ABSTRACT
We report draft genome sequence of Stenotrophomonas sp. strain SAM8, isolated from environmental water. The draft genome size is 3,665,538 bp with a G + C content of 67.2% and contains 6 rRNA sequence (single copies of 5S, 16S & 23S rRNA). The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no. LDAV00000000.

No MeSH data available.


Related in: MedlinePlus

Subsystem distribution of Stenotrophomonas strain SAM8 (based on RAST annotation server).
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f0005: Subsystem distribution of Stenotrophomonas strain SAM8 (based on RAST annotation server).

Mentions: A total of 3448 protein coding sequences in 355 subsystems were functionally annotated by Rapid Annotation using the Subsystems Technology (RAST) [4] server (Fig. 1). Genome analysis revealed that the genome of Stenotrophomonas sp. stain SAM8 contains various gene clusters for biosynthesis of secondary metabolites and antimicrobial peptides. The genome information displays several antibiotic resistance genes encoding methicillin, efflux pumps, quinolone, fosmidomycin and acriflavine resistance protein [5].There also exist in the genome multiple genes encoding chitinase, xylanase, esterase and lipase enzymes. Overall, the strain demonstrates the potential for resistance to a wide range of antimicrobial and heavy metals.


Genome sequencing and annotation of Stenotrophomonas sp. SAM8.

Selim S, Hassan S, Hagagy N - Genom Data (2015)

Subsystem distribution of Stenotrophomonas strain SAM8 (based on RAST annotation server).
© Copyright Policy - CC BY-NC-ND
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4664673&req=5

f0005: Subsystem distribution of Stenotrophomonas strain SAM8 (based on RAST annotation server).
Mentions: A total of 3448 protein coding sequences in 355 subsystems were functionally annotated by Rapid Annotation using the Subsystems Technology (RAST) [4] server (Fig. 1). Genome analysis revealed that the genome of Stenotrophomonas sp. stain SAM8 contains various gene clusters for biosynthesis of secondary metabolites and antimicrobial peptides. The genome information displays several antibiotic resistance genes encoding methicillin, efflux pumps, quinolone, fosmidomycin and acriflavine resistance protein [5].There also exist in the genome multiple genes encoding chitinase, xylanase, esterase and lipase enzymes. Overall, the strain demonstrates the potential for resistance to a wide range of antimicrobial and heavy metals.

Bottom Line: The draft genome size is 3,665,538 bp with a G + C content of 67.2% and contains 6 rRNA sequence (single copies of 5S, 16S & 23S rRNA).The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no.LDAV00000000.

View Article: PubMed Central - PubMed

Affiliation: Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, Aljouf University, Sakaka, P.O. Box 2014, Saudi Arabia ; Microbiology and Botany Department, Faculty of Science, Suez Canal University, Ismailia, P.O. Box 41522, Egypt.

ABSTRACT
We report draft genome sequence of Stenotrophomonas sp. strain SAM8, isolated from environmental water. The draft genome size is 3,665,538 bp with a G + C content of 67.2% and contains 6 rRNA sequence (single copies of 5S, 16S & 23S rRNA). The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no. LDAV00000000.

No MeSH data available.


Related in: MedlinePlus