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Whole genome sequencing of Halomonas sp. SUBG004 isolated from Little Rann of Kutch, a desert of India.

Patel JH, Thaker VS - Genom Data (2015)

Bottom Line: Chemotaxonomic and phylogenetic properties were consistent with its classification in the genus Halomonas.Here we report the whole genome sequence of Halomonas sp.SUBG004 deposited in DDBJ/EMBL/GenBank under accession number JPEU0100000 which provides insights for salt stress adaptation through betaine synthesis.

View Article: PubMed Central - PubMed

Affiliation: Laboratory of plant Biotechnology and Genetic Engineering, UGC-CAS Department of Biosciences, Saurashtra University, Rajkot, India.

ABSTRACT
A salt tolerant strain, designated as SUBG004, was isolated from the desert of India, Little Rann of Kutch. The organism is a Gram-negative, facultatively anaerobic and rod shaped bacterium. Chemotaxonomic and phylogenetic properties were consistent with its classification in the genus Halomonas. Here we report the whole genome sequence of Halomonas sp. SUBG004 deposited in DDBJ/EMBL/GenBank under accession number JPEU0100000 which provides insights for salt stress adaptation through betaine synthesis.

No MeSH data available.


Related in: MedlinePlus

Subsystem distribution of Halomonas sp. SUBG004 (based on RAST annotation server).
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f0005: Subsystem distribution of Halomonas sp. SUBG004 (based on RAST annotation server).

Mentions: Coding sequences were functionally annotated by Rapid Annotation using the Subsystems Technology (RAST) server in 451 subsystems (Fig. 1). Gene sequences of a betaine synthesis operon putatively encoding BetI: HTH type transcriptional regulator, BetA:Choline dehydrogenase (EC 1.1.99.1) and BetB:Betaine aldehyde dehydrogenase (EC 1.2.18) were identified using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database available in RAST [4].


Whole genome sequencing of Halomonas sp. SUBG004 isolated from Little Rann of Kutch, a desert of India.

Patel JH, Thaker VS - Genom Data (2015)

Subsystem distribution of Halomonas sp. SUBG004 (based on RAST annotation server).
© Copyright Policy - CC BY-NC-ND
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4664669&req=5

f0005: Subsystem distribution of Halomonas sp. SUBG004 (based on RAST annotation server).
Mentions: Coding sequences were functionally annotated by Rapid Annotation using the Subsystems Technology (RAST) server in 451 subsystems (Fig. 1). Gene sequences of a betaine synthesis operon putatively encoding BetI: HTH type transcriptional regulator, BetA:Choline dehydrogenase (EC 1.1.99.1) and BetB:Betaine aldehyde dehydrogenase (EC 1.2.18) were identified using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database available in RAST [4].

Bottom Line: Chemotaxonomic and phylogenetic properties were consistent with its classification in the genus Halomonas.Here we report the whole genome sequence of Halomonas sp.SUBG004 deposited in DDBJ/EMBL/GenBank under accession number JPEU0100000 which provides insights for salt stress adaptation through betaine synthesis.

View Article: PubMed Central - PubMed

Affiliation: Laboratory of plant Biotechnology and Genetic Engineering, UGC-CAS Department of Biosciences, Saurashtra University, Rajkot, India.

ABSTRACT
A salt tolerant strain, designated as SUBG004, was isolated from the desert of India, Little Rann of Kutch. The organism is a Gram-negative, facultatively anaerobic and rod shaped bacterium. Chemotaxonomic and phylogenetic properties were consistent with its classification in the genus Halomonas. Here we report the whole genome sequence of Halomonas sp. SUBG004 deposited in DDBJ/EMBL/GenBank under accession number JPEU0100000 which provides insights for salt stress adaptation through betaine synthesis.

No MeSH data available.


Related in: MedlinePlus