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Genome sequence and description of Mannheimia massilioguelmaensis sp. nov.

Hadjadj L, Bentorki AA, Michelle C, Amoura K, Djahoudi A, Rolain JM - New Microbes New Infect (2015)

Bottom Line: Mannheimia massilioguelmaensis is a Gram-negative, facultative anaerobic rod, member of the family Pasteurellaceae.Here we describe this organism, together with the complete genome sequence and annotation.The 2 186 813 bp long genome contains 2048 protein-coding and 55 RNA genes, including eight rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de recherche sur les maladies infectieuses et tropicales émergentes (URMITE), UMR CNRS, IHU Méditerranée Infection, Faculté de Médecine et de Pharmacie, Aix-Marseille-Université, Marseille, France.

ABSTRACT
Strain MG13(T) sp. nov. is the type strain of Mannheimia massilioguelmaensis, a new species within the genus Mannheimia. This strain was isolated from the exudate of a skin lesion of an Algerian man. Mannheimia massilioguelmaensis is a Gram-negative, facultative anaerobic rod, member of the family Pasteurellaceae. Here we describe this organism, together with the complete genome sequence and annotation. The 2 186 813 bp long genome contains 2048 protein-coding and 55 RNA genes, including eight rRNA genes.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of chromosome. From outside to center: genes on forward strand (colored by COGs categories), genes on reverse strand (colored by COGs categories), RNA genes (tRNAs green, rRNAs red), G+C content, G+C skew.
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fig4: Graphical circular map of chromosome. From outside to center: genes on forward strand (colored by COGs categories), genes on reverse strand (colored by COGs categories), RNA genes (tRNAs green, rRNAs red), G+C content, G+C skew.

Mentions: The genome is 2 186 813 bp long with 36.21% G+C content (Fig. 4 and Table 2). It is composed of eight scaffolds (composed of eight contigs). Of the 2103 predicted genes, 2048 were protein-coding genes and 55 were RNAs (three genes are 5S rRNA, two genes are 16S rRNA, three genes are 23S rRNA and 47 genes are TRNA genes). A total of 1692 genes (82.62%) were assigned as putative function (by cogs or by NR blast). Twenty-five genes were identified as ORFans (1.22%). The remaining genes were annotated as hypothetical proteins (144 genes, 7.03%). The distribution of genes into COGs functional categories is presented in Table 3.


Genome sequence and description of Mannheimia massilioguelmaensis sp. nov.

Hadjadj L, Bentorki AA, Michelle C, Amoura K, Djahoudi A, Rolain JM - New Microbes New Infect (2015)

Graphical circular map of chromosome. From outside to center: genes on forward strand (colored by COGs categories), genes on reverse strand (colored by COGs categories), RNA genes (tRNAs green, rRNAs red), G+C content, G+C skew.
© Copyright Policy - CC BY-NC-ND
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4660222&req=5

fig4: Graphical circular map of chromosome. From outside to center: genes on forward strand (colored by COGs categories), genes on reverse strand (colored by COGs categories), RNA genes (tRNAs green, rRNAs red), G+C content, G+C skew.
Mentions: The genome is 2 186 813 bp long with 36.21% G+C content (Fig. 4 and Table 2). It is composed of eight scaffolds (composed of eight contigs). Of the 2103 predicted genes, 2048 were protein-coding genes and 55 were RNAs (three genes are 5S rRNA, two genes are 16S rRNA, three genes are 23S rRNA and 47 genes are TRNA genes). A total of 1692 genes (82.62%) were assigned as putative function (by cogs or by NR blast). Twenty-five genes were identified as ORFans (1.22%). The remaining genes were annotated as hypothetical proteins (144 genes, 7.03%). The distribution of genes into COGs functional categories is presented in Table 3.

Bottom Line: Mannheimia massilioguelmaensis is a Gram-negative, facultative anaerobic rod, member of the family Pasteurellaceae.Here we describe this organism, together with the complete genome sequence and annotation.The 2 186 813 bp long genome contains 2048 protein-coding and 55 RNA genes, including eight rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de recherche sur les maladies infectieuses et tropicales émergentes (URMITE), UMR CNRS, IHU Méditerranée Infection, Faculté de Médecine et de Pharmacie, Aix-Marseille-Université, Marseille, France.

ABSTRACT
Strain MG13(T) sp. nov. is the type strain of Mannheimia massilioguelmaensis, a new species within the genus Mannheimia. This strain was isolated from the exudate of a skin lesion of an Algerian man. Mannheimia massilioguelmaensis is a Gram-negative, facultative anaerobic rod, member of the family Pasteurellaceae. Here we describe this organism, together with the complete genome sequence and annotation. The 2 186 813 bp long genome contains 2048 protein-coding and 55 RNA genes, including eight rRNA genes.

No MeSH data available.


Related in: MedlinePlus