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Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3.

Manzoor S, Müller B, Niazi A, Schnürer A, Bongcam-Rudloff E - Stand Genomic Sci (2015)

Bottom Line: It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane.The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes.Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3.

View Article: PubMed Central - PubMed

Affiliation: Department of Animal Breeding and Genetics Science, Swedish University of Agricultural Science, SLU-Global Bioinformatics Centre, Uppsala, SE 750 07 Sweden ; University of the Punjab, Lahore, Pakistan.

ABSTRACT
Syntrophaceticus schinkii strain Sp3 is a mesophilic syntrophic acetate oxidizing bacterium, belonging to the Clostridia class within the phylum Firmicutes, originally isolated from a mesophilic methanogenic digester. It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane. The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes. Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3.

No MeSH data available.


Related in: MedlinePlus

Image. Phase-contrast micrograph of Syntrophaceticus schinkii strain Sp3
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Fig1: Image. Phase-contrast micrograph of Syntrophaceticus schinkii strain Sp3

Mentions: Syntrophaceticus schinkii Sp3 (Fig. 1) is an obligate anaerobic, endospores forming bacterium, whose cells were found to be Gram variable with changing shapes dependent on the growth condition (Table 1, [6]). No flagella have been observed under any condition tested. It can grow up to 0.6 M NH4Cl in pure culture between 25 °C and 40 °C. A more detailed physiological description can be found in Westerholm et al. [6]. Minimum Information about the Genome Sequence (MIGS) of S. schinkii strain Sp3 is provided in Table 1 and Table S1 (Additional file 1).Fig. 1


Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3.

Manzoor S, Müller B, Niazi A, Schnürer A, Bongcam-Rudloff E - Stand Genomic Sci (2015)

Image. Phase-contrast micrograph of Syntrophaceticus schinkii strain Sp3
© Copyright Policy - OpenAccess
Related In: Results  -  Collection

License 1 - License 2
Show All Figures
getmorefigures.php?uid=PMC4642661&req=5

Fig1: Image. Phase-contrast micrograph of Syntrophaceticus schinkii strain Sp3
Mentions: Syntrophaceticus schinkii Sp3 (Fig. 1) is an obligate anaerobic, endospores forming bacterium, whose cells were found to be Gram variable with changing shapes dependent on the growth condition (Table 1, [6]). No flagella have been observed under any condition tested. It can grow up to 0.6 M NH4Cl in pure culture between 25 °C and 40 °C. A more detailed physiological description can be found in Westerholm et al. [6]. Minimum Information about the Genome Sequence (MIGS) of S. schinkii strain Sp3 is provided in Table 1 and Table S1 (Additional file 1).Fig. 1

Bottom Line: It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane.The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes.Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3.

View Article: PubMed Central - PubMed

Affiliation: Department of Animal Breeding and Genetics Science, Swedish University of Agricultural Science, SLU-Global Bioinformatics Centre, Uppsala, SE 750 07 Sweden ; University of the Punjab, Lahore, Pakistan.

ABSTRACT
Syntrophaceticus schinkii strain Sp3 is a mesophilic syntrophic acetate oxidizing bacterium, belonging to the Clostridia class within the phylum Firmicutes, originally isolated from a mesophilic methanogenic digester. It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane. The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes. Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3.

No MeSH data available.


Related in: MedlinePlus