Limits...
GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications.

Laird MR, Langille MG, Brinkman FS - Bioinformatics (2015)

Bottom Line: A simple static image of genomes and associated metadata is very limiting, as researchers expect rich, interactive tools similar to the web applications found in the post-Web 2.0 world.In addition GenomeD3Plot has built in functionality to export any resulting genome visualization in PNG or SVG format for easy inclusion in manuscripts or presentations.However, its features enable it to be more widely applicable for dynamic visualization of genomic data in general.

View Article: PubMed Central - PubMed

Affiliation: Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6 and.

No MeSH data available.


GenomeD3Plot circular and linear visualization of an example genome with annotation data. See www.pathogenomics.sfu.ca/islandviewer/demo and http://bl.ocks.org/lairdm/6a770c94c6793eee660d to see GenomeD3Plot’s more dynamic nature
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btv376-F1: GenomeD3Plot circular and linear visualization of an example genome with annotation data. See www.pathogenomics.sfu.ca/islandviewer/demo and http://bl.ocks.org/lairdm/6a770c94c6793eee660d to see GenomeD3Plot’s more dynamic nature

Mentions: GenomeD3Plot works best when integrated as a component of a larger platform; it has recently been integrated as the visualization component of a number of analysis pipelines and databases including a new version of IslandViewer (Dhillon et al., 2015) and the Pseudomonas Genome Database (Winsor et al., 2011). As well it’s being used as a visualization tool in the Integrated Infectious Disease Analysis (IRIDA) bacterial genome analysis platform (www.IRIDA.ca). Fig. 1.


GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications.

Laird MR, Langille MG, Brinkman FS - Bioinformatics (2015)

GenomeD3Plot circular and linear visualization of an example genome with annotation data. See www.pathogenomics.sfu.ca/islandviewer/demo and http://bl.ocks.org/lairdm/6a770c94c6793eee660d to see GenomeD3Plot’s more dynamic nature
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4595901&req=5

btv376-F1: GenomeD3Plot circular and linear visualization of an example genome with annotation data. See www.pathogenomics.sfu.ca/islandviewer/demo and http://bl.ocks.org/lairdm/6a770c94c6793eee660d to see GenomeD3Plot’s more dynamic nature
Mentions: GenomeD3Plot works best when integrated as a component of a larger platform; it has recently been integrated as the visualization component of a number of analysis pipelines and databases including a new version of IslandViewer (Dhillon et al., 2015) and the Pseudomonas Genome Database (Winsor et al., 2011). As well it’s being used as a visualization tool in the Integrated Infectious Disease Analysis (IRIDA) bacterial genome analysis platform (www.IRIDA.ca). Fig. 1.

Bottom Line: A simple static image of genomes and associated metadata is very limiting, as researchers expect rich, interactive tools similar to the web applications found in the post-Web 2.0 world.In addition GenomeD3Plot has built in functionality to export any resulting genome visualization in PNG or SVG format for easy inclusion in manuscripts or presentations.However, its features enable it to be more widely applicable for dynamic visualization of genomic data in general.

View Article: PubMed Central - PubMed

Affiliation: Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6 and.

No MeSH data available.