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ICeE an interface for C. elegans experiments.

Montañana F, Julien RA, Vaglio P, Matthews LR, Tichit L, Ewbank JJ - Worm (2014)

Bottom Line: An increasing number of laboratories are using the COPAS Biosort™ to implement high-throughput approaches to tackle diverse biological problems.We describe a simple electronic database designed to allow easy storage and retrieval of Biosort data for C. elegans, but that has a wide potential application for organizing electronic files and data sets.ICeE is an Open Source application.

View Article: PubMed Central - PubMed

Affiliation: Centre d'Immunologie de Marseille-Luminy; UM2 Aix-Marseille Université ; Marseille, France ; INSERM U1104 ; Marseille, France ; CNRS UMR7280 ; Marseille, France.

ABSTRACT
An increasing number of laboratories are using the COPAS Biosort™ to implement high-throughput approaches to tackle diverse biological problems. While providing a powerful tool for generating quantitative data, the utility of the Biosort is currently limited by the absence of resources for data management. We describe a simple electronic database designed to allow easy storage and retrieval of Biosort data for C. elegans, but that has a wide potential application for organizing electronic files and data sets. ICeE is an Open Source application. The code and accompanying documentation are freely available via the web at http://www.ciml.univ-mrs.fr/EWBANK_jonathan/software.html.

No MeSH data available.


Related in: MedlinePlus

Defining sets of strains. Screen-grab of data entry for an imaginary experiment. To facilitate data entry, multiple strains can be chosen and each associated with a single set of experimental conditions.
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f0003: Defining sets of strains. Screen-grab of data entry for an imaginary experiment. To facilitate data entry, multiple strains can be chosen and each associated with a single set of experimental conditions.

Mentions: To provide flexibility, multiple treatments can be associated with a single experimental condition (e.g., following an RNAi treatment, worms are cultured in the presence of a high concentration of salt). Also, experiments may use a single or multiple nematode strains. For the latter, lists of strains can be constituted and associated with the same experimental treatment(s), facilitating data entry (Fig. 3).Figure 3.


ICeE an interface for C. elegans experiments.

Montañana F, Julien RA, Vaglio P, Matthews LR, Tichit L, Ewbank JJ - Worm (2014)

Defining sets of strains. Screen-grab of data entry for an imaginary experiment. To facilitate data entry, multiple strains can be chosen and each associated with a single set of experimental conditions.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4588384&req=5

f0003: Defining sets of strains. Screen-grab of data entry for an imaginary experiment. To facilitate data entry, multiple strains can be chosen and each associated with a single set of experimental conditions.
Mentions: To provide flexibility, multiple treatments can be associated with a single experimental condition (e.g., following an RNAi treatment, worms are cultured in the presence of a high concentration of salt). Also, experiments may use a single or multiple nematode strains. For the latter, lists of strains can be constituted and associated with the same experimental treatment(s), facilitating data entry (Fig. 3).Figure 3.

Bottom Line: An increasing number of laboratories are using the COPAS Biosort™ to implement high-throughput approaches to tackle diverse biological problems.We describe a simple electronic database designed to allow easy storage and retrieval of Biosort data for C. elegans, but that has a wide potential application for organizing electronic files and data sets.ICeE is an Open Source application.

View Article: PubMed Central - PubMed

Affiliation: Centre d'Immunologie de Marseille-Luminy; UM2 Aix-Marseille Université ; Marseille, France ; INSERM U1104 ; Marseille, France ; CNRS UMR7280 ; Marseille, France.

ABSTRACT
An increasing number of laboratories are using the COPAS Biosort™ to implement high-throughput approaches to tackle diverse biological problems. While providing a powerful tool for generating quantitative data, the utility of the Biosort is currently limited by the absence of resources for data management. We describe a simple electronic database designed to allow easy storage and retrieval of Biosort data for C. elegans, but that has a wide potential application for organizing electronic files and data sets. ICeE is an Open Source application. The code and accompanying documentation are freely available via the web at http://www.ciml.univ-mrs.fr/EWBANK_jonathan/software.html.

No MeSH data available.


Related in: MedlinePlus