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Cyanobacterial KnowledgeBase (CKB), a Compendium of Cyanobacterial Genomes and Proteomes.

Peter AP, Lakshmanan K, Mohandass S, Varadharaj S, Thilagar S, Abdul Kareem KA, Dharmar P, Gopalakrishnan S, Lakshmanan U - PLoS ONE (2015)

Bottom Line: Cyanobacterial KnowledgeBase (CKB) is a free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders.The database also includes cyanoBLAST, an advanced tool that facilitates comparative analysis, among cyanobacterial genomes and genomes of E. coli (prokaryote) and Arabidopsis (eukaryote).The database is developed and maintained by the Sub-Distributed Informatics Centre (sponsored by the Department of Biotechnology, Govt. of India) of the National Facility for Marine Cyanobacteria, a facility dedicated to marine cyanobacterial research.

View Article: PubMed Central - PubMed

Affiliation: National Facility for Marine Cyanobacteria, Sub-Distributed Bioinformatics Centre (sponsored by Department of Biotechnology, Govt. of India), Department of Marine Biotechnology, School of Marine Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.

ABSTRACT
Cyanobacterial KnowledgeBase (CKB) is a free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders. The database also contains tools for sequence analysis. The Species report and the gene report provide details about each species and gene (including sequence features and gene ontology annotations) respectively. The database also includes cyanoBLAST, an advanced tool that facilitates comparative analysis, among cyanobacterial genomes and genomes of E. coli (prokaryote) and Arabidopsis (eukaryote). The database is developed and maintained by the Sub-Distributed Informatics Centre (sponsored by the Department of Biotechnology, Govt. of India) of the National Facility for Marine Cyanobacteria, a facility dedicated to marine cyanobacterial research. CKB is freely available at http://nfmc.res.in/ckb/index.html.

No MeSH data available.


Search and browse tool.The CKB search tools allow to search by keywords or accession and browse tool, through which users can peruse to individual organism.
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pone.0136262.g003: Search and browse tool.The CKB search tools allow to search by keywords or accession and browse tool, through which users can peruse to individual organism.

Mentions: The Cyanobacterial KnowledgeBase consists of information related to 74 fully sequenced cyanobacterial species of seven orders, namely Chroococcales, Chroococcidiopsidales, Gloeobacteriales, Nostocales, Oscillatoriales, Pleurocapsales and Synechococcales. The browse option helps with orientation and navigation through the species under each order (Fig 3). The species report can be reached from the “Browse by Order” option, which provides brief information about the species, taxonomy, morphological features, genome status, and its genome details.


Cyanobacterial KnowledgeBase (CKB), a Compendium of Cyanobacterial Genomes and Proteomes.

Peter AP, Lakshmanan K, Mohandass S, Varadharaj S, Thilagar S, Abdul Kareem KA, Dharmar P, Gopalakrishnan S, Lakshmanan U - PLoS ONE (2015)

Search and browse tool.The CKB search tools allow to search by keywords or accession and browse tool, through which users can peruse to individual organism.
© Copyright Policy
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4549288&req=5

pone.0136262.g003: Search and browse tool.The CKB search tools allow to search by keywords or accession and browse tool, through which users can peruse to individual organism.
Mentions: The Cyanobacterial KnowledgeBase consists of information related to 74 fully sequenced cyanobacterial species of seven orders, namely Chroococcales, Chroococcidiopsidales, Gloeobacteriales, Nostocales, Oscillatoriales, Pleurocapsales and Synechococcales. The browse option helps with orientation and navigation through the species under each order (Fig 3). The species report can be reached from the “Browse by Order” option, which provides brief information about the species, taxonomy, morphological features, genome status, and its genome details.

Bottom Line: Cyanobacterial KnowledgeBase (CKB) is a free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders.The database also includes cyanoBLAST, an advanced tool that facilitates comparative analysis, among cyanobacterial genomes and genomes of E. coli (prokaryote) and Arabidopsis (eukaryote).The database is developed and maintained by the Sub-Distributed Informatics Centre (sponsored by the Department of Biotechnology, Govt. of India) of the National Facility for Marine Cyanobacteria, a facility dedicated to marine cyanobacterial research.

View Article: PubMed Central - PubMed

Affiliation: National Facility for Marine Cyanobacteria, Sub-Distributed Bioinformatics Centre (sponsored by Department of Biotechnology, Govt. of India), Department of Marine Biotechnology, School of Marine Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.

ABSTRACT
Cyanobacterial KnowledgeBase (CKB) is a free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders. The database also contains tools for sequence analysis. The Species report and the gene report provide details about each species and gene (including sequence features and gene ontology annotations) respectively. The database also includes cyanoBLAST, an advanced tool that facilitates comparative analysis, among cyanobacterial genomes and genomes of E. coli (prokaryote) and Arabidopsis (eukaryote). The database is developed and maintained by the Sub-Distributed Informatics Centre (sponsored by the Department of Biotechnology, Govt. of India) of the National Facility for Marine Cyanobacteria, a facility dedicated to marine cyanobacterial research. CKB is freely available at http://nfmc.res.in/ckb/index.html.

No MeSH data available.