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Cyanobacterial KnowledgeBase (CKB), a Compendium of Cyanobacterial Genomes and Proteomes.

Peter AP, Lakshmanan K, Mohandass S, Varadharaj S, Thilagar S, Abdul Kareem KA, Dharmar P, Gopalakrishnan S, Lakshmanan U - PLoS ONE (2015)

Bottom Line: Cyanobacterial KnowledgeBase (CKB) is a free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders.The database also includes cyanoBLAST, an advanced tool that facilitates comparative analysis, among cyanobacterial genomes and genomes of E. coli (prokaryote) and Arabidopsis (eukaryote).The database is developed and maintained by the Sub-Distributed Informatics Centre (sponsored by the Department of Biotechnology, Govt. of India) of the National Facility for Marine Cyanobacteria, a facility dedicated to marine cyanobacterial research.

View Article: PubMed Central - PubMed

Affiliation: National Facility for Marine Cyanobacteria, Sub-Distributed Bioinformatics Centre (sponsored by Department of Biotechnology, Govt. of India), Department of Marine Biotechnology, School of Marine Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.

ABSTRACT
Cyanobacterial KnowledgeBase (CKB) is a free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders. The database also contains tools for sequence analysis. The Species report and the gene report provide details about each species and gene (including sequence features and gene ontology annotations) respectively. The database also includes cyanoBLAST, an advanced tool that facilitates comparative analysis, among cyanobacterial genomes and genomes of E. coli (prokaryote) and Arabidopsis (eukaryote). The database is developed and maintained by the Sub-Distributed Informatics Centre (sponsored by the Department of Biotechnology, Govt. of India) of the National Facility for Marine Cyanobacteria, a facility dedicated to marine cyanobacterial research. CKB is freely available at http://nfmc.res.in/ckb/index.html.

No MeSH data available.


CKB web interface.
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pone.0136262.g001: CKB web interface.

Mentions: Seventy-four fully sequenced genomes of seven orders are currently included in the CKB database. This comprises 12 species of Chroococcales, 1 of Chroococcidiopsidales, 2 of Gloeobacteriales, 12 of Nostocales, 7 of Oscillatoriales, 2 of Pleurocapsales and 38 of Synechococcales. The web user interface of CKB is shown in (Fig 1) and the complete list of the species exists in the CKB is given in Table 1.


Cyanobacterial KnowledgeBase (CKB), a Compendium of Cyanobacterial Genomes and Proteomes.

Peter AP, Lakshmanan K, Mohandass S, Varadharaj S, Thilagar S, Abdul Kareem KA, Dharmar P, Gopalakrishnan S, Lakshmanan U - PLoS ONE (2015)

CKB web interface.
© Copyright Policy
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4549288&req=5

pone.0136262.g001: CKB web interface.
Mentions: Seventy-four fully sequenced genomes of seven orders are currently included in the CKB database. This comprises 12 species of Chroococcales, 1 of Chroococcidiopsidales, 2 of Gloeobacteriales, 12 of Nostocales, 7 of Oscillatoriales, 2 of Pleurocapsales and 38 of Synechococcales. The web user interface of CKB is shown in (Fig 1) and the complete list of the species exists in the CKB is given in Table 1.

Bottom Line: Cyanobacterial KnowledgeBase (CKB) is a free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders.The database also includes cyanoBLAST, an advanced tool that facilitates comparative analysis, among cyanobacterial genomes and genomes of E. coli (prokaryote) and Arabidopsis (eukaryote).The database is developed and maintained by the Sub-Distributed Informatics Centre (sponsored by the Department of Biotechnology, Govt. of India) of the National Facility for Marine Cyanobacteria, a facility dedicated to marine cyanobacterial research.

View Article: PubMed Central - PubMed

Affiliation: National Facility for Marine Cyanobacteria, Sub-Distributed Bioinformatics Centre (sponsored by Department of Biotechnology, Govt. of India), Department of Marine Biotechnology, School of Marine Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.

ABSTRACT
Cyanobacterial KnowledgeBase (CKB) is a free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders. The database also contains tools for sequence analysis. The Species report and the gene report provide details about each species and gene (including sequence features and gene ontology annotations) respectively. The database also includes cyanoBLAST, an advanced tool that facilitates comparative analysis, among cyanobacterial genomes and genomes of E. coli (prokaryote) and Arabidopsis (eukaryote). The database is developed and maintained by the Sub-Distributed Informatics Centre (sponsored by the Department of Biotechnology, Govt. of India) of the National Facility for Marine Cyanobacteria, a facility dedicated to marine cyanobacterial research. CKB is freely available at http://nfmc.res.in/ckb/index.html.

No MeSH data available.