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The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide.

Vie AK, Najafi J, Liu B, Winge P, Butenko MA, Hornslien KS, Kumpf R, Aalen RB, Bones AM, Brembu T - J. Exp. Bot. (2015)

Bottom Line: Here we present three novel members of the IDL subfamily and show that two of them are strongly and rapidly induced by different biotic and abiotic stresses.Expression patterns of the IDA/IDL and PIP/PIPL genes were analysed using in silico data, qRT-PCR and GUS promoter lines.Transcriptomic responses to PIPL3 peptide treatment suggested a role in regulation of biotic stress responses and cell wall modification.

View Article: PubMed Central - PubMed

Affiliation: Department of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway.

No MeSH data available.


Related in: MedlinePlus

Developmental expression patterns of IDA/IDL and PIP/PIPL genes based on quantitative real-time PCR. The different developmental stages are annotated according to Boyes et al. (2001). F, flower; RL, rosette leaf; ST, stem; CL, cauline leaf; R, root; SQ, silique; ND, not detected. The expression levels (log2-transformed) relative to TIP41-LIKE are given next to the colour scale. n=3.
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Figure 5: Developmental expression patterns of IDA/IDL and PIP/PIPL genes based on quantitative real-time PCR. The different developmental stages are annotated according to Boyes et al. (2001). F, flower; RL, rosette leaf; ST, stem; CL, cauline leaf; R, root; SQ, silique; ND, not detected. The expression levels (log2-transformed) relative to TIP41-LIKE are given next to the colour scale. n=3.

Mentions: The expression levels of the IDA/IDL and PIP/PIPL genes under normal growth conditions were in general very low (Fig. 5); for some of the genes (IDL1, IDL5 and PIPL1) hardly any transcripts were detected. The highest transcript levels were found at the later stages of Arabidopsis development (i.e. IDL6, IDL7 and IDL8), indicating a possible role for these genes during seed development or senescence. Other genes, like IDL3 and PIPL3, were weakly expressed during all stages.


The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide.

Vie AK, Najafi J, Liu B, Winge P, Butenko MA, Hornslien KS, Kumpf R, Aalen RB, Bones AM, Brembu T - J. Exp. Bot. (2015)

Developmental expression patterns of IDA/IDL and PIP/PIPL genes based on quantitative real-time PCR. The different developmental stages are annotated according to Boyes et al. (2001). F, flower; RL, rosette leaf; ST, stem; CL, cauline leaf; R, root; SQ, silique; ND, not detected. The expression levels (log2-transformed) relative to TIP41-LIKE are given next to the colour scale. n=3.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License 1 - License 2
Show All Figures
getmorefigures.php?uid=PMC4526919&req=5

Figure 5: Developmental expression patterns of IDA/IDL and PIP/PIPL genes based on quantitative real-time PCR. The different developmental stages are annotated according to Boyes et al. (2001). F, flower; RL, rosette leaf; ST, stem; CL, cauline leaf; R, root; SQ, silique; ND, not detected. The expression levels (log2-transformed) relative to TIP41-LIKE are given next to the colour scale. n=3.
Mentions: The expression levels of the IDA/IDL and PIP/PIPL genes under normal growth conditions were in general very low (Fig. 5); for some of the genes (IDL1, IDL5 and PIPL1) hardly any transcripts were detected. The highest transcript levels were found at the later stages of Arabidopsis development (i.e. IDL6, IDL7 and IDL8), indicating a possible role for these genes during seed development or senescence. Other genes, like IDL3 and PIPL3, were weakly expressed during all stages.

Bottom Line: Here we present three novel members of the IDL subfamily and show that two of them are strongly and rapidly induced by different biotic and abiotic stresses.Expression patterns of the IDA/IDL and PIP/PIPL genes were analysed using in silico data, qRT-PCR and GUS promoter lines.Transcriptomic responses to PIPL3 peptide treatment suggested a role in regulation of biotic stress responses and cell wall modification.

View Article: PubMed Central - PubMed

Affiliation: Department of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway.

No MeSH data available.


Related in: MedlinePlus