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The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide.

Vie AK, Najafi J, Liu B, Winge P, Butenko MA, Hornslien KS, Kumpf R, Aalen RB, Bones AM, Brembu T - J. Exp. Bot. (2015)

Bottom Line: Here we present three novel members of the IDL subfamily and show that two of them are strongly and rapidly induced by different biotic and abiotic stresses.Expression patterns of the IDA/IDL and PIP/PIPL genes were analysed using in silico data, qRT-PCR and GUS promoter lines.Transcriptomic responses to PIPL3 peptide treatment suggested a role in regulation of biotic stress responses and cell wall modification.

View Article: PubMed Central - PubMed

Affiliation: Department of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway.

No MeSH data available.


Related in: MedlinePlus

Distribution of IDA/IDL and PIP/PIPL genes within Viridiplantae. The conserved C-terminal domain of IDA/IDL and PIP/PIPL proteins were used in TBLASTN searches against the NCBI (genomes and ESTs), Phytozome v9.1 (genomes) and OneKP (ESTs) databases. The tree was adapted from Phytozome (Goodstein et al., 2012) and Delay et al. (2013).
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Figure 3: Distribution of IDA/IDL and PIP/PIPL genes within Viridiplantae. The conserved C-terminal domain of IDA/IDL and PIP/PIPL proteins were used in TBLASTN searches against the NCBI (genomes and ESTs), Phytozome v9.1 (genomes) and OneKP (ESTs) databases. The tree was adapted from Phytozome (Goodstein et al., 2012) and Delay et al. (2013).

Mentions: BLAST searches for IDA/IDL and PIP/PIPL family genes within the Viridiplantae were performed using full-length protein sequences as well as mature peptide sequences of Arabidopsis proteins. The searches showed that genes encoding both peptide families are present in seed plants, but absent in lycophytes (Selaginella), mosses (Physcomitrella) and green algae (Fig. 3). This distribution is similar to the one previously reported for CEPs (Delay et al., 2013; Roberts et al., 2013).


The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide.

Vie AK, Najafi J, Liu B, Winge P, Butenko MA, Hornslien KS, Kumpf R, Aalen RB, Bones AM, Brembu T - J. Exp. Bot. (2015)

Distribution of IDA/IDL and PIP/PIPL genes within Viridiplantae. The conserved C-terminal domain of IDA/IDL and PIP/PIPL proteins were used in TBLASTN searches against the NCBI (genomes and ESTs), Phytozome v9.1 (genomes) and OneKP (ESTs) databases. The tree was adapted from Phytozome (Goodstein et al., 2012) and Delay et al. (2013).
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License 1 - License 2
Show All Figures
getmorefigures.php?uid=PMC4526919&req=5

Figure 3: Distribution of IDA/IDL and PIP/PIPL genes within Viridiplantae. The conserved C-terminal domain of IDA/IDL and PIP/PIPL proteins were used in TBLASTN searches against the NCBI (genomes and ESTs), Phytozome v9.1 (genomes) and OneKP (ESTs) databases. The tree was adapted from Phytozome (Goodstein et al., 2012) and Delay et al. (2013).
Mentions: BLAST searches for IDA/IDL and PIP/PIPL family genes within the Viridiplantae were performed using full-length protein sequences as well as mature peptide sequences of Arabidopsis proteins. The searches showed that genes encoding both peptide families are present in seed plants, but absent in lycophytes (Selaginella), mosses (Physcomitrella) and green algae (Fig. 3). This distribution is similar to the one previously reported for CEPs (Delay et al., 2013; Roberts et al., 2013).

Bottom Line: Here we present three novel members of the IDL subfamily and show that two of them are strongly and rapidly induced by different biotic and abiotic stresses.Expression patterns of the IDA/IDL and PIP/PIPL genes were analysed using in silico data, qRT-PCR and GUS promoter lines.Transcriptomic responses to PIPL3 peptide treatment suggested a role in regulation of biotic stress responses and cell wall modification.

View Article: PubMed Central - PubMed

Affiliation: Department of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway.

No MeSH data available.


Related in: MedlinePlus