JPred4: a protein secondary structure prediction server.
Bottom Line: Reporting of results is enhanced both on the website and through the optional email summaries and batch submission results.Predictions are now presented in SVG format with options to view full multiple sequence alignments with and without gaps and insertions.Finally, the help-pages have been updated and tool-tips added as well as step-by-step tutorials.
Affiliation: Division of Computational Biology, College of Life Sciences, University of Dundee, Dundee, DD1 5EH, UK.Show MeSH
Mentions: Figure 2 summarizes the main results page while Figure 3 shows examples of summary emails returned to a user for single or batch sequence submissions. Unlike previous versions of JPred, the primary visualization of a JPred4 prediction result is a scrollable SVG image. The SVG is generated by Jalview 2.9 (www.jalview.org) (36) run in command-line mode as part of the JPred4 web server processing pipeline so users do not need to run Jalview on their own computers. However, the JalviewLite Java applet result page is still provided for users working with Java-enabled browsers who prefer direct access to Jalview's sophisticated functions.
Affiliation: Division of Computational Biology, College of Life Sciences, University of Dundee, Dundee, DD1 5EH, UK.