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NeuroPep: a comprehensive resource of neuropeptides.

Wang Y, Wang M, Yin S, Jang R, Wang J, Xue Z, Xu T - Database (Oxford) (2015)

Bottom Line: Information derived from these peptide sequences such as amino acid compositions, isoelectric points, molecular weight and other physicochemical properties of peptides are also provided.A quick search feature allows users to search the database with keywords such as sequence, name, family, etc., and an advanced search page helps users to combine queries with logical operators like AND/OR.In addition, user-friendly web tools like browsing, sequence alignment and mapping are also integrated into the NeuroPep database.

View Article: PubMed Central - PubMed

Affiliation: Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, School of Software Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA and National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.

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An overview of the user interface of NeuroPep. (A) The browse output of NPY neuropeptide family. (B) An example of an entry NP03900 of the NPY family. (C) The properties page of the entry NP03900. (D) The structure view page of the entry NP03900.
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bav038-F1: An overview of the user interface of NeuroPep. (A) The browse output of NPY neuropeptide family. (B) An example of an entry NP03900 of the NPY family. (C) The properties page of the entry NP03900. (D) The structure view page of the entry NP03900.

Mentions: We constructed the NeuroPep server using Apache Tomcat Server 7 with MySQL Community Server 5.6. HTML, JSP and Ajax were used to build the front-end, and Java and JDBC were used to implement the web services and data management. The Highcharts Javascript package was used to add interactive plots to the web site. An overview of the user interface of NeuroPep database is shown in Figure 1.Figure 1.


NeuroPep: a comprehensive resource of neuropeptides.

Wang Y, Wang M, Yin S, Jang R, Wang J, Xue Z, Xu T - Database (Oxford) (2015)

An overview of the user interface of NeuroPep. (A) The browse output of NPY neuropeptide family. (B) An example of an entry NP03900 of the NPY family. (C) The properties page of the entry NP03900. (D) The structure view page of the entry NP03900.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4414954&req=5

bav038-F1: An overview of the user interface of NeuroPep. (A) The browse output of NPY neuropeptide family. (B) An example of an entry NP03900 of the NPY family. (C) The properties page of the entry NP03900. (D) The structure view page of the entry NP03900.
Mentions: We constructed the NeuroPep server using Apache Tomcat Server 7 with MySQL Community Server 5.6. HTML, JSP and Ajax were used to build the front-end, and Java and JDBC were used to implement the web services and data management. The Highcharts Javascript package was used to add interactive plots to the web site. An overview of the user interface of NeuroPep database is shown in Figure 1.Figure 1.

Bottom Line: Information derived from these peptide sequences such as amino acid compositions, isoelectric points, molecular weight and other physicochemical properties of peptides are also provided.A quick search feature allows users to search the database with keywords such as sequence, name, family, etc., and an advanced search page helps users to combine queries with logical operators like AND/OR.In addition, user-friendly web tools like browsing, sequence alignment and mapping are also integrated into the NeuroPep database.

View Article: PubMed Central - PubMed

Affiliation: Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, School of Software Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China, Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA and National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.

Show MeSH
Related in: MedlinePlus