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SMART: recent updates, new developments and status in 2015.

Letunic I, Doerks T, Bork P - Nucleic Acids Res. (2014)

Bottom Line: The underlying protein databases were synchronized with UniProt, Ensembl and STRING, bringing the total number of annotated domains and other protein features above 100 million.SMART's 'Genomic' mode, which annotates proteins from completely sequenced genomes was greatly expanded and now includes 2031 species, compared to 1133 in the previous release.Taxonomic tree displays in SMART have been significantly improved, and can be easily navigated using the integrated search engine.

View Article: PubMed Central - PubMed

Affiliation: Biobyte solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany.

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Related in: MedlinePlus

New data sources included in the protein annotation pages and the redesigned taxonomy viewer. (a) A list of post-translational modifications present in the protein, as annotated by PTMcode (11). More than 60 types of modifications are included. (b) Orthologous groups that contain the protein, as annotated by eggNOG (12). Group descriptions and taxonomic classes are listed. (c) New taxonomic breakdown viewer, which supports very large trees and provides quick navigation through the integrated full text search engine.
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Figure 2: New data sources included in the protein annotation pages and the redesigned taxonomy viewer. (a) A list of post-translational modifications present in the protein, as annotated by PTMcode (11). More than 60 types of modifications are included. (b) Orthologous groups that contain the protein, as annotated by eggNOG (12). Group descriptions and taxonomic classes are listed. (c) New taxonomic breakdown viewer, which supports very large trees and provides quick navigation through the integrated full text search engine.

Mentions: With the redesign of the protein annotation pages, the current version of SMART introduces two new external information sources: post-translational modification data and detailed orthology information (Figure 2).


SMART: recent updates, new developments and status in 2015.

Letunic I, Doerks T, Bork P - Nucleic Acids Res. (2014)

New data sources included in the protein annotation pages and the redesigned taxonomy viewer. (a) A list of post-translational modifications present in the protein, as annotated by PTMcode (11). More than 60 types of modifications are included. (b) Orthologous groups that contain the protein, as annotated by eggNOG (12). Group descriptions and taxonomic classes are listed. (c) New taxonomic breakdown viewer, which supports very large trees and provides quick navigation through the integrated full text search engine.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4384020&req=5

Figure 2: New data sources included in the protein annotation pages and the redesigned taxonomy viewer. (a) A list of post-translational modifications present in the protein, as annotated by PTMcode (11). More than 60 types of modifications are included. (b) Orthologous groups that contain the protein, as annotated by eggNOG (12). Group descriptions and taxonomic classes are listed. (c) New taxonomic breakdown viewer, which supports very large trees and provides quick navigation through the integrated full text search engine.
Mentions: With the redesign of the protein annotation pages, the current version of SMART introduces two new external information sources: post-translational modification data and detailed orthology information (Figure 2).

Bottom Line: The underlying protein databases were synchronized with UniProt, Ensembl and STRING, bringing the total number of annotated domains and other protein features above 100 million.SMART's 'Genomic' mode, which annotates proteins from completely sequenced genomes was greatly expanded and now includes 2031 species, compared to 1133 in the previous release.Taxonomic tree displays in SMART have been significantly improved, and can be easily navigated using the integrated search engine.

View Article: PubMed Central - PubMed

Affiliation: Biobyte solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany.

Show MeSH
Related in: MedlinePlus