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Beyond protein expression, MOPED goes multi-omics.

Montague E, Janko I, Stanberry L, Lee E, Choiniere J, Anderson N, Stewart E, Broomall W, Higdon R, Kolker N, Kolker E - Nucleic Acids Res. (2014)

Bottom Line: These records correspond to 670 unique combinations of experiment, condition, localization and tissue.Advanced searching enables querying for genes, proteins, experiments, pathways and keywords of interest.The system is enhanced with visualizations for comparing across different data types.

View Article: PubMed Central - PubMed

Affiliation: Bioinformatics and High-Throughput Analysis Laboratory, Center for Developmental Therapeutics, Seattle Children's Research Institute, Seattle, WA, USA 98101 High-Throughput Analysis Core, Seattle Children's Research Institute, Seattle, WA, USA 98101 CDO Analytics, Seattle Children's, Seattle, WA, USA 98101 Data-Enabled Life Sciences Alliance (DELSA Global), Seattle, WA, USA 98101.

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(A) Basic Search example for ‘gene = BRC*’, default view. (B) Basic Search example for ‘gene=BRC* and organism=human and (condition=standard or condition=*cancer*)’, extended view. Search results are expanded to include P-value, False Discovery Rate (FDR), localization and chromosome.
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Figure 2: (A) Basic Search example for ‘gene = BRC*’, default view. (B) Basic Search example for ‘gene=BRC* and organism=human and (condition=standard or condition=*cancer*)’, extended view. Search results are expanded to include P-value, False Discovery Rate (FDR), localization and chromosome.

Mentions: Each of the six tabs in MOPED is designed to enable rapid querying. MOPED uses Lucene for full-text indexing, and AspectJ and Google Analytics for tracking and optimization (Apache Foundation, http://lucene.apache.org/; Eclipse Foundation, http://eclipse.org/aspectj/; Google, http://www.google.com/analytics/). The queries are built and executed via the Basic Search (Figure 2A and B) and Advanced Search (Figure 3) options. The Highlights section features preset examples.


Beyond protein expression, MOPED goes multi-omics.

Montague E, Janko I, Stanberry L, Lee E, Choiniere J, Anderson N, Stewart E, Broomall W, Higdon R, Kolker N, Kolker E - Nucleic Acids Res. (2014)

(A) Basic Search example for ‘gene = BRC*’, default view. (B) Basic Search example for ‘gene=BRC* and organism=human and (condition=standard or condition=*cancer*)’, extended view. Search results are expanded to include P-value, False Discovery Rate (FDR), localization and chromosome.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4383969&req=5

Figure 2: (A) Basic Search example for ‘gene = BRC*’, default view. (B) Basic Search example for ‘gene=BRC* and organism=human and (condition=standard or condition=*cancer*)’, extended view. Search results are expanded to include P-value, False Discovery Rate (FDR), localization and chromosome.
Mentions: Each of the six tabs in MOPED is designed to enable rapid querying. MOPED uses Lucene for full-text indexing, and AspectJ and Google Analytics for tracking and optimization (Apache Foundation, http://lucene.apache.org/; Eclipse Foundation, http://eclipse.org/aspectj/; Google, http://www.google.com/analytics/). The queries are built and executed via the Basic Search (Figure 2A and B) and Advanced Search (Figure 3) options. The Highlights section features preset examples.

Bottom Line: These records correspond to 670 unique combinations of experiment, condition, localization and tissue.Advanced searching enables querying for genes, proteins, experiments, pathways and keywords of interest.The system is enhanced with visualizations for comparing across different data types.

View Article: PubMed Central - PubMed

Affiliation: Bioinformatics and High-Throughput Analysis Laboratory, Center for Developmental Therapeutics, Seattle Children's Research Institute, Seattle, WA, USA 98101 High-Throughput Analysis Core, Seattle Children's Research Institute, Seattle, WA, USA 98101 CDO Analytics, Seattle Children's, Seattle, WA, USA 98101 Data-Enabled Life Sciences Alliance (DELSA Global), Seattle, WA, USA 98101.

Show MeSH
Related in: MedlinePlus