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DoGSD: the dog and wolf genome SNP database.

Bai B, Zhao WM, Tang BX, Wang YQ, Wang L, Zhang Z, Yang HC, Liu YH, Zhu JW, Irwin DM, Wang GD, Zhang YP - Nucleic Acids Res. (2014)

Bottom Line: In addition to the dbSNP data set (build 139), DoGSD incorporates a comprehensive collection of SNPs from two newly sequenced samples (1 wolf and 1 dog) and collected SNPs from three latest dog/wolf genetic studies (7 wolves and 68 dogs), which were taken together for analysis with the population genetic statistics, Fst.In addition, DoGSD integrates some closely related information including SNP annotation, summary lists of SNPs located in genes, synonymous and non-synonymous SNPs, sampling location and breed information.All these features make DoGSD a useful resource for in-depth analysis in dog-/wolf-related studies.

View Article: PubMed Central - PubMed

Affiliation: Laboratory for Conservation and Utilization of Bioresource & Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming 650091, China State Key Laboratory of Genetic Resources and Evolution, and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China Kunming College of Life Science, University of Chinese Academy of Sciences,Kunming 650204, China.

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Example of a comparative search. (A) An example of search entry. (B) The comparative search result.
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Figure 3: Example of a comparative search. (A) An example of search entry. (B) The comparative search result.

Mentions: Users may type in chromosome numbers, start and end positions as input to retrieve data for either a single SNP or a group of SNPs. Comparative search of SNPs between two or more individuals were also implemented (Figure 3A). Figure 3B shows a typical comparative search result. Users can compare the SNPs of individuals interested them within a chromosome range.


DoGSD: the dog and wolf genome SNP database.

Bai B, Zhao WM, Tang BX, Wang YQ, Wang L, Zhang Z, Yang HC, Liu YH, Zhu JW, Irwin DM, Wang GD, Zhang YP - Nucleic Acids Res. (2014)

Example of a comparative search. (A) An example of search entry. (B) The comparative search result.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4383968&req=5

Figure 3: Example of a comparative search. (A) An example of search entry. (B) The comparative search result.
Mentions: Users may type in chromosome numbers, start and end positions as input to retrieve data for either a single SNP or a group of SNPs. Comparative search of SNPs between two or more individuals were also implemented (Figure 3A). Figure 3B shows a typical comparative search result. Users can compare the SNPs of individuals interested them within a chromosome range.

Bottom Line: In addition to the dbSNP data set (build 139), DoGSD incorporates a comprehensive collection of SNPs from two newly sequenced samples (1 wolf and 1 dog) and collected SNPs from three latest dog/wolf genetic studies (7 wolves and 68 dogs), which were taken together for analysis with the population genetic statistics, Fst.In addition, DoGSD integrates some closely related information including SNP annotation, summary lists of SNPs located in genes, synonymous and non-synonymous SNPs, sampling location and breed information.All these features make DoGSD a useful resource for in-depth analysis in dog-/wolf-related studies.

View Article: PubMed Central - PubMed

Affiliation: Laboratory for Conservation and Utilization of Bioresource & Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming 650091, China State Key Laboratory of Genetic Resources and Evolution, and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China Kunming College of Life Science, University of Chinese Academy of Sciences,Kunming 650204, China.

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