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GenoBase: comprehensive resource database of Escherichia coli K-12.

Otsuka Y, Muto A, Takeuchi R, Okada C, Ishikawa M, Nakamura K, Yamamoto N, Dose H, Nakahigashi K, Tanishima S, Suharnan S, Nomura W, Nakayashiki T, Aref WG, Bochner BR, Conway T, Gribskov M, Kihara D, Rudd KE, Tohsato Y, Wanner BL, Mori H - Nucleic Acids Res. (2014)

Bottom Line: Accordingly, these resources have now been used in numerous investigations of a multitude of cell processes.Quality control is extremely important for evaluating results generated by these resources.Because the annotation has been changed since 2005, which we originally used for the construction, we have updated these genomic resources accordingly.

View Article: PubMed Central - PubMed

Affiliation: Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan.

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Related in: MedlinePlus

Sample screen images. (A) Sample pages of plasmid clone libraries. Schematic view of inconsistency and cloned region of target genes in nucleotide level. (B) Schematic view of deletion collection. (C) Omics results of each of the target gene. (D) BIOLOG phenotype analysis results in global, gene and plate level view.
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Figure 7: Sample screen images. (A) Sample pages of plasmid clone libraries. Schematic view of inconsistency and cloned region of target genes in nucleotide level. (B) Schematic view of deletion collection. (C) Omics results of each of the target gene. (D) BIOLOG phenotype analysis results in global, gene and plate level view.

Mentions: The methods used for quality control of our resources are shown in Figure 6. On each web page, the left panel shows the information on the latest annotation basically from GenBank database entry (see Figure 7). The second and third tabs show sequences of the target genes and bioinformatics analysis of them. Currently, six tabs are available for six different resources.


GenoBase: comprehensive resource database of Escherichia coli K-12.

Otsuka Y, Muto A, Takeuchi R, Okada C, Ishikawa M, Nakamura K, Yamamoto N, Dose H, Nakahigashi K, Tanishima S, Suharnan S, Nomura W, Nakayashiki T, Aref WG, Bochner BR, Conway T, Gribskov M, Kihara D, Rudd KE, Tohsato Y, Wanner BL, Mori H - Nucleic Acids Res. (2014)

Sample screen images. (A) Sample pages of plasmid clone libraries. Schematic view of inconsistency and cloned region of target genes in nucleotide level. (B) Schematic view of deletion collection. (C) Omics results of each of the target gene. (D) BIOLOG phenotype analysis results in global, gene and plate level view.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4383962&req=5

Figure 7: Sample screen images. (A) Sample pages of plasmid clone libraries. Schematic view of inconsistency and cloned region of target genes in nucleotide level. (B) Schematic view of deletion collection. (C) Omics results of each of the target gene. (D) BIOLOG phenotype analysis results in global, gene and plate level view.
Mentions: The methods used for quality control of our resources are shown in Figure 6. On each web page, the left panel shows the information on the latest annotation basically from GenBank database entry (see Figure 7). The second and third tabs show sequences of the target genes and bioinformatics analysis of them. Currently, six tabs are available for six different resources.

Bottom Line: Accordingly, these resources have now been used in numerous investigations of a multitude of cell processes.Quality control is extremely important for evaluating results generated by these resources.Because the annotation has been changed since 2005, which we originally used for the construction, we have updated these genomic resources accordingly.

View Article: PubMed Central - PubMed

Affiliation: Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan.

Show MeSH
Related in: MedlinePlus