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arrayMap 2014: an updated cancer genome resource.

Cai H, Gupta S, Rath P, Ai N, Baudis M - Nucleic Acids Res. (2014)

Bottom Line: Data sets included in arrayMap have been assembled from public repositories as well as additional resources, and integrated by applying custom processing pipelines.Online tools have been upgraded for a more flexible array data visualization, including options for processing user provided, non-public data sets.Data integration has been improved by mapping to multiple editions of the human reference genome, with the majority of the data now being available for the UCSC hg18 as well as GRCh37 versions.

View Article: PubMed Central - PubMed

Affiliation: Institute of Molecular Life Sciences, University of Zurich, 8057 Zurich, Switzerland Swiss Institute of Bioinformatics, 8057 Zurich, Switzerland Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University, Chengdu 610064, Sichuan, China haoyang.cai@gmail.com.

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The histogram profile of breast cancer samples focusing on chromosomes 8 and 17 generated by the API, displaying the frequency of copy number gains (up, yellow) and losses (down, blue). Genomic map positions of two genes were included in the API call, and therefore are labeled at the bottom of the figure.
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Figure 3: The histogram profile of breast cancer samples focusing on chromosomes 8 and 17 generated by the API, displaying the frequency of copy number gains (up, yellow) and losses (down, blue). Genomic map positions of two genes were included in the API call, and therefore are labeled at the bottom of the figure.

Mentions: The query will return a gain/loss frequency histogram for chromosomes 8 and 17, derived from 1000 random samples of ICD-O 8500/3 (breast carcinoma - ‘invasive carcinoma of no special type’), in the form of a PNG data stream (Figure 3):


arrayMap 2014: an updated cancer genome resource.

Cai H, Gupta S, Rath P, Ai N, Baudis M - Nucleic Acids Res. (2014)

The histogram profile of breast cancer samples focusing on chromosomes 8 and 17 generated by the API, displaying the frequency of copy number gains (up, yellow) and losses (down, blue). Genomic map positions of two genes were included in the API call, and therefore are labeled at the bottom of the figure.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4383937&req=5

Figure 3: The histogram profile of breast cancer samples focusing on chromosomes 8 and 17 generated by the API, displaying the frequency of copy number gains (up, yellow) and losses (down, blue). Genomic map positions of two genes were included in the API call, and therefore are labeled at the bottom of the figure.
Mentions: The query will return a gain/loss frequency histogram for chromosomes 8 and 17, derived from 1000 random samples of ICD-O 8500/3 (breast carcinoma - ‘invasive carcinoma of no special type’), in the form of a PNG data stream (Figure 3):

Bottom Line: Data sets included in arrayMap have been assembled from public repositories as well as additional resources, and integrated by applying custom processing pipelines.Online tools have been upgraded for a more flexible array data visualization, including options for processing user provided, non-public data sets.Data integration has been improved by mapping to multiple editions of the human reference genome, with the majority of the data now being available for the UCSC hg18 as well as GRCh37 versions.

View Article: PubMed Central - PubMed

Affiliation: Institute of Molecular Life Sciences, University of Zurich, 8057 Zurich, Switzerland Swiss Institute of Bioinformatics, 8057 Zurich, Switzerland Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University, Chengdu 610064, Sichuan, China haoyang.cai@gmail.com.

Show MeSH
Related in: MedlinePlus