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LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.

Barghini E, Natali L, Giordani T, Cossu RM, Scalabrin S, Cattonaro F, Šimková H, Vrána J, Doležel J, Morgante M, Cavallini A - DNA Res. (2014)

Bottom Line: The insertion time of intact retroelements was estimated based on sister LTR's divergence.Although some elements inserted relatively recently, the mean insertion age of the isolated retroelements is around 18 million yrs.The occurrence of numerous solo-LTRs related to isolated full-length retroelements was ascertained for two Gypsy elements and one Copia element.

View Article: PubMed Central - PubMed

Affiliation: Department of Agricultural, Food, and Environmental Sciences, University of Pisa, Pisa I-56124, Italy.

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Distribution of full-length olive LTR-REs according to the ratio between the number of mapped reads per kb measured separately on LTR and inter-LTR regions.
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DSU042F3: Distribution of full-length olive LTR-REs according to the ratio between the number of mapped reads per kb measured separately on LTR and inter-LTR regions.

Mentions: To estimate the equilibrium between RE replication and RE loss, Illumina reads were mapped onto each full-length LTR-RE, keeping LTR sequences separate from the respective inter-LTR region. The results of this analysis are shown in Fig. 3.Figure 3.


LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.

Barghini E, Natali L, Giordani T, Cossu RM, Scalabrin S, Cattonaro F, Šimková H, Vrána J, Doležel J, Morgante M, Cavallini A - DNA Res. (2014)

Distribution of full-length olive LTR-REs according to the ratio between the number of mapped reads per kb measured separately on LTR and inter-LTR regions.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4379980&req=5

DSU042F3: Distribution of full-length olive LTR-REs according to the ratio between the number of mapped reads per kb measured separately on LTR and inter-LTR regions.
Mentions: To estimate the equilibrium between RE replication and RE loss, Illumina reads were mapped onto each full-length LTR-RE, keeping LTR sequences separate from the respective inter-LTR region. The results of this analysis are shown in Fig. 3.Figure 3.

Bottom Line: The insertion time of intact retroelements was estimated based on sister LTR's divergence.Although some elements inserted relatively recently, the mean insertion age of the isolated retroelements is around 18 million yrs.The occurrence of numerous solo-LTRs related to isolated full-length retroelements was ascertained for two Gypsy elements and one Copia element.

View Article: PubMed Central - PubMed

Affiliation: Department of Agricultural, Food, and Environmental Sciences, University of Pisa, Pisa I-56124, Italy.

Show MeSH
Related in: MedlinePlus