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DupliPHY-Web: a web server for DupliPHY and DupliPHY-ML.

Ames RM, Lovell SC - Bioinformatics (2014)

Bottom Line: We have recently developed DupliPHY, a software tool to infer gene family histories using parsimony and maximum likelihood.Here, we present DupliPHY-Web a web server for DupliPHY that implements additional maximum likelihood functionality and provides users an intuitive interface to run DupliPHY.DupliPHY-Web is available at www.bioinf.manchester.ac.uk/dupliphy/ : ryan.ames@manchester.ac.uk Supplementary data are available at Bioinformatics online.

View Article: PubMed Central - PubMed

Affiliation: Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, UK.

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The DupliPHY-Web interface showing the analysis options for both DupliPHY and DupliPHY-ML. The user can upload the relevant data files and start the analysis. The results of the analysis are then emailed to the supplied email address
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btu645-F1: The DupliPHY-Web interface showing the analysis options for both DupliPHY and DupliPHY-ML. The user can upload the relevant data files and start the analysis. The results of the analysis are then emailed to the supplied email address

Mentions: DupliPHY-Web is a web interface which can be used to run the DupliPHY programs (Fig. 1). The run options for both programs are divided into mandatory and optional parameters. The web interface ensures that all necessary parameters have been selected before the data are submitted to the server. To run either DupliPHY program the user will need a family file and a phylogenetic tree. Descriptions of the file formats as well as instructions of how to generate the underlying data for these files can be found in the help documentation.Fig. 1.


DupliPHY-Web: a web server for DupliPHY and DupliPHY-ML.

Ames RM, Lovell SC - Bioinformatics (2014)

The DupliPHY-Web interface showing the analysis options for both DupliPHY and DupliPHY-ML. The user can upload the relevant data files and start the analysis. The results of the analysis are then emailed to the supplied email address
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4308661&req=5

btu645-F1: The DupliPHY-Web interface showing the analysis options for both DupliPHY and DupliPHY-ML. The user can upload the relevant data files and start the analysis. The results of the analysis are then emailed to the supplied email address
Mentions: DupliPHY-Web is a web interface which can be used to run the DupliPHY programs (Fig. 1). The run options for both programs are divided into mandatory and optional parameters. The web interface ensures that all necessary parameters have been selected before the data are submitted to the server. To run either DupliPHY program the user will need a family file and a phylogenetic tree. Descriptions of the file formats as well as instructions of how to generate the underlying data for these files can be found in the help documentation.Fig. 1.

Bottom Line: We have recently developed DupliPHY, a software tool to infer gene family histories using parsimony and maximum likelihood.Here, we present DupliPHY-Web a web server for DupliPHY that implements additional maximum likelihood functionality and provides users an intuitive interface to run DupliPHY.DupliPHY-Web is available at www.bioinf.manchester.ac.uk/dupliphy/ : ryan.ames@manchester.ac.uk Supplementary data are available at Bioinformatics online.

View Article: PubMed Central - PubMed

Affiliation: Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, UK.

Show MeSH