Limits...
Draft sequencing and analysis of the genome of pufferfish Takifugu flavidus.

Gao Y, Gao Q, Zhang H, Wang L, Zhang F, Yang C, Song L - DNA Res. (2014)

Bottom Line: The combined length of repetitive sequences was 26.5 Mb, which accounted for 6.87% of the genome, indicating that the compactness of T. flavidus genome was approximative with that of T. rubripes genome.A total of 1,253 non-coding RNA genes and 30,285 protein-encoding genes were assigned to the genome.This draft genome provides a valuable resource for understanding and improving both fundamental and applied research with pufferfish in the future.

View Article: PubMed Central - PubMed

Affiliation: The Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, Shandong 266071, China University of Chinese Academy of Sciences, Shijingshan, Beijing 100049, China.

Show MeSH

Related in: MedlinePlus

GO category classification. The number of GO terms for the biological process, molecular function and cellular component categories was shown. (A) GO-level distribution. P, F and C were short form for biological process, molecular function and cellular component, respectively. (B) Level 2 GO terms in biological process category. (C) Level 2 GO terms in molecular function category. (D) Level 2 GO terms in cellular component category. This figure appears in colour in the online version of DNA Research.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
getmorefigures.php?uid=PMC4263296&req=5

DSU025F3: GO category classification. The number of GO terms for the biological process, molecular function and cellular component categories was shown. (A) GO-level distribution. P, F and C were short form for biological process, molecular function and cellular component, respectively. (B) Level 2 GO terms in biological process category. (C) Level 2 GO terms in molecular function category. (D) Level 2 GO terms in cellular component category. This figure appears in colour in the online version of DNA Research.

Mentions: A total of 51,990 GO annotations were assigned, and 15,813 of all protein-encoding genes were classified into the biological process, molecular function and cellular component categories (Fig. 3). In the level 2 biological process category, cellular process (19.0%), metabolic process (17.2%) and biological regulation (14.0%) accounted for the major portion, whereas the molecular function category and cellular component category were mainly consisted of binding (51.7%) and cell (54.5%), respectively. There were 117 metabolic pathways affiliated by the presumptive protein-encoding genes of T. flavidus in the KEGG database (data not shown).Figure 3.


Draft sequencing and analysis of the genome of pufferfish Takifugu flavidus.

Gao Y, Gao Q, Zhang H, Wang L, Zhang F, Yang C, Song L - DNA Res. (2014)

GO category classification. The number of GO terms for the biological process, molecular function and cellular component categories was shown. (A) GO-level distribution. P, F and C were short form for biological process, molecular function and cellular component, respectively. (B) Level 2 GO terms in biological process category. (C) Level 2 GO terms in molecular function category. (D) Level 2 GO terms in cellular component category. This figure appears in colour in the online version of DNA Research.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4263296&req=5

DSU025F3: GO category classification. The number of GO terms for the biological process, molecular function and cellular component categories was shown. (A) GO-level distribution. P, F and C were short form for biological process, molecular function and cellular component, respectively. (B) Level 2 GO terms in biological process category. (C) Level 2 GO terms in molecular function category. (D) Level 2 GO terms in cellular component category. This figure appears in colour in the online version of DNA Research.
Mentions: A total of 51,990 GO annotations were assigned, and 15,813 of all protein-encoding genes were classified into the biological process, molecular function and cellular component categories (Fig. 3). In the level 2 biological process category, cellular process (19.0%), metabolic process (17.2%) and biological regulation (14.0%) accounted for the major portion, whereas the molecular function category and cellular component category were mainly consisted of binding (51.7%) and cell (54.5%), respectively. There were 117 metabolic pathways affiliated by the presumptive protein-encoding genes of T. flavidus in the KEGG database (data not shown).Figure 3.

Bottom Line: The combined length of repetitive sequences was 26.5 Mb, which accounted for 6.87% of the genome, indicating that the compactness of T. flavidus genome was approximative with that of T. rubripes genome.A total of 1,253 non-coding RNA genes and 30,285 protein-encoding genes were assigned to the genome.This draft genome provides a valuable resource for understanding and improving both fundamental and applied research with pufferfish in the future.

View Article: PubMed Central - PubMed

Affiliation: The Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, Shandong 266071, China University of Chinese Academy of Sciences, Shijingshan, Beijing 100049, China.

Show MeSH
Related in: MedlinePlus