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Draft sequencing and analysis of the genome of pufferfish Takifugu flavidus.

Gao Y, Gao Q, Zhang H, Wang L, Zhang F, Yang C, Song L - DNA Res. (2014)

Bottom Line: There were 132,775 and 394 presumptive genes playing roles in the colour pattern variation, the relatively slow growth and the lipid metabolism, respectively.Among them, genes involved in the microtubule-dependent transport system, angiogenesis, decapentaplegic pathway and lipid mobilization were significantly expanded in the T. flavidus genome.This draft genome provides a valuable resource for understanding and improving both fundamental and applied research with pufferfish in the future.

View Article: PubMed Central - PubMed

Affiliation: The Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, Shandong 266071, China University of Chinese Academy of Sciences, Shijingshan, Beijing 100049, China.

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GO category classification. The number of GO terms for the biological process, molecular function and cellular component categories was shown. (A) GO-level distribution. P, F and C were short form for biological process, molecular function and cellular component, respectively. (B) Level 2 GO terms in biological process category. (C) Level 2 GO terms in molecular function category. (D) Level 2 GO terms in cellular component category. This figure appears in colour in the online version of DNA Research.
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DSU025F3: GO category classification. The number of GO terms for the biological process, molecular function and cellular component categories was shown. (A) GO-level distribution. P, F and C were short form for biological process, molecular function and cellular component, respectively. (B) Level 2 GO terms in biological process category. (C) Level 2 GO terms in molecular function category. (D) Level 2 GO terms in cellular component category. This figure appears in colour in the online version of DNA Research.

Mentions: A total of 51,990 GO annotations were assigned, and 15,813 of all protein-encoding genes were classified into the biological process, molecular function and cellular component categories (Fig. 3). In the level 2 biological process category, cellular process (19.0%), metabolic process (17.2%) and biological regulation (14.0%) accounted for the major portion, whereas the molecular function category and cellular component category were mainly consisted of binding (51.7%) and cell (54.5%), respectively. There were 117 metabolic pathways affiliated by the presumptive protein-encoding genes of T. flavidus in the KEGG database (data not shown).Figure 3.


Draft sequencing and analysis of the genome of pufferfish Takifugu flavidus.

Gao Y, Gao Q, Zhang H, Wang L, Zhang F, Yang C, Song L - DNA Res. (2014)

GO category classification. The number of GO terms for the biological process, molecular function and cellular component categories was shown. (A) GO-level distribution. P, F and C were short form for biological process, molecular function and cellular component, respectively. (B) Level 2 GO terms in biological process category. (C) Level 2 GO terms in molecular function category. (D) Level 2 GO terms in cellular component category. This figure appears in colour in the online version of DNA Research.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4263296&req=5

DSU025F3: GO category classification. The number of GO terms for the biological process, molecular function and cellular component categories was shown. (A) GO-level distribution. P, F and C were short form for biological process, molecular function and cellular component, respectively. (B) Level 2 GO terms in biological process category. (C) Level 2 GO terms in molecular function category. (D) Level 2 GO terms in cellular component category. This figure appears in colour in the online version of DNA Research.
Mentions: A total of 51,990 GO annotations were assigned, and 15,813 of all protein-encoding genes were classified into the biological process, molecular function and cellular component categories (Fig. 3). In the level 2 biological process category, cellular process (19.0%), metabolic process (17.2%) and biological regulation (14.0%) accounted for the major portion, whereas the molecular function category and cellular component category were mainly consisted of binding (51.7%) and cell (54.5%), respectively. There were 117 metabolic pathways affiliated by the presumptive protein-encoding genes of T. flavidus in the KEGG database (data not shown).Figure 3.

Bottom Line: There were 132,775 and 394 presumptive genes playing roles in the colour pattern variation, the relatively slow growth and the lipid metabolism, respectively.Among them, genes involved in the microtubule-dependent transport system, angiogenesis, decapentaplegic pathway and lipid mobilization were significantly expanded in the T. flavidus genome.This draft genome provides a valuable resource for understanding and improving both fundamental and applied research with pufferfish in the future.

View Article: PubMed Central - PubMed

Affiliation: The Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, Shandong 266071, China University of Chinese Academy of Sciences, Shijingshan, Beijing 100049, China.

Show MeSH