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Simulation environment and graphical visualization environment: a COPD use-case.

Huertas-Migueláñez M, Mora D, Cano I, Maier D, Gomez-Cabrero D, Lluch-Ariet M, Miralles F - J Transl Med (2014)

Bottom Line: The data warehouse manager is responsible for managing the stored information and supporting its flow among the different modules.It has been proved that the simulation environment presented here allows the user to research and study the internal mechanisms of the human physiology by the use of models via a graphical visualization environment.A new tool for bio-researchers is ready for deployment in various use cases scenarios.

View Article: PubMed Central - HTML - PubMed

ABSTRACT

Background: Today, many different tools are developed to execute and visualize physiological models that represent the human physiology. Most of these tools run models written in very specific programming languages which in turn simplify the communication among models. Nevertheless, not all of these tools are able to run models written in different programming languages. In addition, interoperability between such models remains an unresolved issue.

Results: In this paper we present a simulation environment that allows, first, the execution of models developed in different programming languages and second the communication of parameters to interconnect these models. This simulation environment, developed within the Synergy-COPD project, aims at helping and supporting bio-researchers and medical students understand the internal mechanisms of the human body through the use of physiological models. This tool is composed of a graphical visualization environment, which is a web interface through which the user can interact with the models, and a simulation workflow management system composed of a control module and a data warehouse manager. The control module monitors the correct functioning of the whole system. The data warehouse manager is responsible for managing the stored information and supporting its flow among the different modules.

Conclusion: It has been proved that the simulation environment presented here allows the user to research and study the internal mechanisms of the human physiology by the use of models via a graphical visualization environment. A new tool for bio-researchers is ready for deployment in various use cases scenarios.

Show MeSH
Once the user has logged in, s/he can see the models available in the system or look for them introducing a keyword on the top right side of the screen.
© Copyright Policy - open-access
Related In: Results  -  Collection

License 1 - License 2
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Figure 5: Once the user has logged in, s/he can see the models available in the system or look for them introducing a keyword on the top right side of the screen.

Mentions: Once the user is logged in, s/he can see the models included in the system (see Figure 5), or search for models in the KB by introducing a keyword that is present in the models' metadata. When the user selects a model to be executed, another model can be added to the execution queue provided that a mapped parameter exists between them.


Simulation environment and graphical visualization environment: a COPD use-case.

Huertas-Migueláñez M, Mora D, Cano I, Maier D, Gomez-Cabrero D, Lluch-Ariet M, Miralles F - J Transl Med (2014)

Once the user has logged in, s/he can see the models available in the system or look for them introducing a keyword on the top right side of the screen.
© Copyright Policy - open-access
Related In: Results  -  Collection

License 1 - License 2
Show All Figures
getmorefigures.php?uid=PMC4255913&req=5

Figure 5: Once the user has logged in, s/he can see the models available in the system or look for them introducing a keyword on the top right side of the screen.
Mentions: Once the user is logged in, s/he can see the models included in the system (see Figure 5), or search for models in the KB by introducing a keyword that is present in the models' metadata. When the user selects a model to be executed, another model can be added to the execution queue provided that a mapped parameter exists between them.

Bottom Line: The data warehouse manager is responsible for managing the stored information and supporting its flow among the different modules.It has been proved that the simulation environment presented here allows the user to research and study the internal mechanisms of the human physiology by the use of models via a graphical visualization environment.A new tool for bio-researchers is ready for deployment in various use cases scenarios.

View Article: PubMed Central - HTML - PubMed

ABSTRACT

Background: Today, many different tools are developed to execute and visualize physiological models that represent the human physiology. Most of these tools run models written in very specific programming languages which in turn simplify the communication among models. Nevertheless, not all of these tools are able to run models written in different programming languages. In addition, interoperability between such models remains an unresolved issue.

Results: In this paper we present a simulation environment that allows, first, the execution of models developed in different programming languages and second the communication of parameters to interconnect these models. This simulation environment, developed within the Synergy-COPD project, aims at helping and supporting bio-researchers and medical students understand the internal mechanisms of the human body through the use of physiological models. This tool is composed of a graphical visualization environment, which is a web interface through which the user can interact with the models, and a simulation workflow management system composed of a control module and a data warehouse manager. The control module monitors the correct functioning of the whole system. The data warehouse manager is responsible for managing the stored information and supporting its flow among the different modules.

Conclusion: It has been proved that the simulation environment presented here allows the user to research and study the internal mechanisms of the human physiology by the use of models via a graphical visualization environment. A new tool for bio-researchers is ready for deployment in various use cases scenarios.

Show MeSH