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Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets.

Heath AP, Greenway M, Powell R, Spring J, Suarez R, Hanley D, Bandlamudi C, McNerney ME, White KP, Grossman RL - J Am Med Inform Assoc (2014)

Bottom Line: Bionimbus also includes Tukey, which is a portal, and associated middleware that provides a single entry point and a single sign on for the various Bionimbus resources; and Yates, which automates the installation, configuration, and maintenance of the software infrastructure required.Most members of the research community have difficulty downloading large genomics datasets and obtaining sufficient storage and computer resources to manage and analyze the data.Cloud computing platforms, such as Bionimbus, with data commons that contain large genomics datasets, are one choice for broadening access to research data in genomics.

View Article: PubMed Central - PubMed

Affiliation: Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, USA.

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Related in: MedlinePlus

Major components of the Open Science Data Cloud (OSDC). The OpenFISMA-based application for monitoring, compliance and security is only part of the Bionimbus Protected Data Cloud, and not used by the OSDC in general. FISMA, Federal Information Security Management Act.
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AMIAJNL2013002155F2: Major components of the Open Science Data Cloud (OSDC). The OpenFISMA-based application for monitoring, compliance and security is only part of the Bionimbus Protected Data Cloud, and not used by the OSDC in general. FISMA, Federal Information Security Management Act.

Mentions: The software architecture is shown in figure 2. The OSDC architecture uses OpenStack (openstack.org) to launch and manage virtual machines and GlusterFS (gluster.org) to manage the data commons and to give users access to working space. Both OpenStack and GlusterFS are open source.


Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets.

Heath AP, Greenway M, Powell R, Spring J, Suarez R, Hanley D, Bandlamudi C, McNerney ME, White KP, Grossman RL - J Am Med Inform Assoc (2014)

Major components of the Open Science Data Cloud (OSDC). The OpenFISMA-based application for monitoring, compliance and security is only part of the Bionimbus Protected Data Cloud, and not used by the OSDC in general. FISMA, Federal Information Security Management Act.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4215034&req=5

AMIAJNL2013002155F2: Major components of the Open Science Data Cloud (OSDC). The OpenFISMA-based application for monitoring, compliance and security is only part of the Bionimbus Protected Data Cloud, and not used by the OSDC in general. FISMA, Federal Information Security Management Act.
Mentions: The software architecture is shown in figure 2. The OSDC architecture uses OpenStack (openstack.org) to launch and manage virtual machines and GlusterFS (gluster.org) to manage the data commons and to give users access to working space. Both OpenStack and GlusterFS are open source.

Bottom Line: Bionimbus also includes Tukey, which is a portal, and associated middleware that provides a single entry point and a single sign on for the various Bionimbus resources; and Yates, which automates the installation, configuration, and maintenance of the software infrastructure required.Most members of the research community have difficulty downloading large genomics datasets and obtaining sufficient storage and computer resources to manage and analyze the data.Cloud computing platforms, such as Bionimbus, with data commons that contain large genomics datasets, are one choice for broadening access to research data in genomics.

View Article: PubMed Central - PubMed

Affiliation: Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, USA.

Show MeSH
Related in: MedlinePlus