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Integrating information retrieval with distant supervision for gene ontology annotation.

Zhu D, Li D, Carterette B, Liu H - Database (Oxford) (2014)

Bottom Line: Then, a greedy approach was applied to associate genes with sentences.Our best performing system for subtask A achieves an F1 score of 0.27 based on exact match and 0.387 allowing relaxed overlap match.Our best performing system for subtask B, a search-based system, achieves an F1 score of 0.075 based on exact match and 0.301 considering hierarchical matches.

View Article: PubMed Central - PubMed

Affiliation: Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA.

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Overview of System B1.
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bau087-F1: Overview of System B1.

Mentions: Figure 1 gives an overview of System B1. We highlight external resources in blue and system modules with gray. Next, we describe each part in detail.Figure 1.


Integrating information retrieval with distant supervision for gene ontology annotation.

Zhu D, Li D, Carterette B, Liu H - Database (Oxford) (2014)

Overview of System B1.
© Copyright Policy - creative-commons
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC4150992&req=5

bau087-F1: Overview of System B1.
Mentions: Figure 1 gives an overview of System B1. We highlight external resources in blue and system modules with gray. Next, we describe each part in detail.Figure 1.

Bottom Line: Then, a greedy approach was applied to associate genes with sentences.Our best performing system for subtask A achieves an F1 score of 0.27 based on exact match and 0.387 allowing relaxed overlap match.Our best performing system for subtask B, a search-based system, achieves an F1 score of 0.075 based on exact match and 0.301 considering hierarchical matches.

View Article: PubMed Central - PubMed

Affiliation: Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA.

Show MeSH
Related in: MedlinePlus