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Correction: Nagy, A., et al. Reassessing Domain Architecture Evolution of Metazoan Proteins: Major Impact of Gene Prediction Errors. Genes 2011, 2, 449-501.

Nagy A, Szláma G, Szarka E, Trexler M, Bányai L, Patthy L - Genes (Basel) (2011)

Bottom Line: We found some errors in the published versions of Figure S2, Figure S3 and Figure S8 of our paper [1].The correct Figures are presented below. [...].

View Article: PubMed Central - PubMed

Affiliation: Institute of Enzymology, Biological Research Center, Hungarian Academy of Sciences, H-1113 Budapest, Hungary. nagya@enzim.hu.

ABSTRACT
We found some errors in the published versions of Figure S2, Figure S3 and Figure S8 of our paper [1]. The correct Figures are presented below. [...].

No MeSH data available.


Correction of the sequence of the XP_416936 protein of Gallus gallus with the FixPred protocol. The DA of the GNOMON predicted protein XP_416936 was found to differ from those of GAS6_MOUSE, GAS6_RAT, GAS6_HUMAN: whereas the latter contain a signal peptide, a Gla, three EGF_CA, a Laminin_G_1 and a Laminin_G_2 domain, XP_416936 lacks the N-terminal signal peptide and Gla domain. The sequence XP_416936_CORRECTED was predicted by the use of ESTs CD217792, BM439645 and BU115578. (a) Comparison of the DAs of XP_416936, XP_416936_CORRECTED with those of GAS6_MOUSE, GAS6_RAT and GAS6_HUMAN. Note that some of the four EGF_CA domains of GAS6 proteins are detected with E-values >0.0001 and are not represented in the DA images generated by Pfam. (b) Alignment of the sequences of XP_416936, XP_416936_CORRECTED with those of GAS6_MOUSE, GAS6_RAT and GAS6_HUMAN.
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f3-genes-02-00599: Correction of the sequence of the XP_416936 protein of Gallus gallus with the FixPred protocol. The DA of the GNOMON predicted protein XP_416936 was found to differ from those of GAS6_MOUSE, GAS6_RAT, GAS6_HUMAN: whereas the latter contain a signal peptide, a Gla, three EGF_CA, a Laminin_G_1 and a Laminin_G_2 domain, XP_416936 lacks the N-terminal signal peptide and Gla domain. The sequence XP_416936_CORRECTED was predicted by the use of ESTs CD217792, BM439645 and BU115578. (a) Comparison of the DAs of XP_416936, XP_416936_CORRECTED with those of GAS6_MOUSE, GAS6_RAT and GAS6_HUMAN. Note that some of the four EGF_CA domains of GAS6 proteins are detected with E-values >0.0001 and are not represented in the DA images generated by Pfam. (b) Alignment of the sequences of XP_416936, XP_416936_CORRECTED with those of GAS6_MOUSE, GAS6_RAT and GAS6_HUMAN.


Correction: Nagy, A., et al. Reassessing Domain Architecture Evolution of Metazoan Proteins: Major Impact of Gene Prediction Errors. Genes 2011, 2, 449-501.

Nagy A, Szláma G, Szarka E, Trexler M, Bányai L, Patthy L - Genes (Basel) (2011)

Correction of the sequence of the XP_416936 protein of Gallus gallus with the FixPred protocol. The DA of the GNOMON predicted protein XP_416936 was found to differ from those of GAS6_MOUSE, GAS6_RAT, GAS6_HUMAN: whereas the latter contain a signal peptide, a Gla, three EGF_CA, a Laminin_G_1 and a Laminin_G_2 domain, XP_416936 lacks the N-terminal signal peptide and Gla domain. The sequence XP_416936_CORRECTED was predicted by the use of ESTs CD217792, BM439645 and BU115578. (a) Comparison of the DAs of XP_416936, XP_416936_CORRECTED with those of GAS6_MOUSE, GAS6_RAT and GAS6_HUMAN. Note that some of the four EGF_CA domains of GAS6 proteins are detected with E-values >0.0001 and are not represented in the DA images generated by Pfam. (b) Alignment of the sequences of XP_416936, XP_416936_CORRECTED with those of GAS6_MOUSE, GAS6_RAT and GAS6_HUMAN.
© Copyright Policy
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3927613&req=5

f3-genes-02-00599: Correction of the sequence of the XP_416936 protein of Gallus gallus with the FixPred protocol. The DA of the GNOMON predicted protein XP_416936 was found to differ from those of GAS6_MOUSE, GAS6_RAT, GAS6_HUMAN: whereas the latter contain a signal peptide, a Gla, three EGF_CA, a Laminin_G_1 and a Laminin_G_2 domain, XP_416936 lacks the N-terminal signal peptide and Gla domain. The sequence XP_416936_CORRECTED was predicted by the use of ESTs CD217792, BM439645 and BU115578. (a) Comparison of the DAs of XP_416936, XP_416936_CORRECTED with those of GAS6_MOUSE, GAS6_RAT and GAS6_HUMAN. Note that some of the four EGF_CA domains of GAS6 proteins are detected with E-values >0.0001 and are not represented in the DA images generated by Pfam. (b) Alignment of the sequences of XP_416936, XP_416936_CORRECTED with those of GAS6_MOUSE, GAS6_RAT and GAS6_HUMAN.
Bottom Line: We found some errors in the published versions of Figure S2, Figure S3 and Figure S8 of our paper [1].The correct Figures are presented below. [...].

View Article: PubMed Central - PubMed

Affiliation: Institute of Enzymology, Biological Research Center, Hungarian Academy of Sciences, H-1113 Budapest, Hungary. nagya@enzim.hu.

ABSTRACT
We found some errors in the published versions of Figure S2, Figure S3 and Figure S8 of our paper [1]. The correct Figures are presented below. [...].

No MeSH data available.