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Efficiency of genomic selection in an established commercial layer breeding program.

Sitzenstock F, Ytournel F, Sharifi AR, Cavero D, Täubert H, Preisinger R, Simianer H - Genet. Sel. Evol. (2013)

Bottom Line: In this case, the generation interval was reduced to eight months.This increase was in all cases associated with higher breeding costs.While genomic selection is shown to have the potential to improve genetic gain in layer breeding programs, its implementation remains a business decision of the breeding company; the possible extra profit for the breeding company depends on whether the customers of breeding stock are willing to pay more for improved genetic quality.

View Article: PubMed Central - HTML - PubMed

Affiliation: Department of Animal Sciences, University of Göttingen, 37075 Göttingen, Germany. fsitzen@gwdg.de

ABSTRACT

Background: In breeding programs for layers, selection of hens and cocks is based on recording phenotypic data from hens in different housing systems. Genomic information can provide additional information for selection and/or allow for a strong reduction in the generation interval. In this study, a typical conventional layer breeding program using a four-line cross was modeled and the expected genetic progress was derived deterministically with the software ZPLAN+. This non-genomic reference scenario was compared to two genomic breeding programs to determine the best strategy for implementing genomic information in layer breeding programs.

Results: In scenario I, genomic information was used in addition to all other information available in the conventional breeding program, so the generation interval was the same as in the reference scenario, i.e. 14.5 months. Here, we assumed that either only young cocks or young cocks and hens were genotyped as selection candidates. In scenario II, we assumed that breeders of both sexes were used at the biologically earliest possible age, so that at the time of selection only performance data of the parent generation and genomic information of the selection candidates were available. In this case, the generation interval was reduced to eight months. In both scenarios, the number of genotyped male selection candidates was varied between 800 and 4800 males and two sizes of the calibration set (500 or 2000 animals) were considered. All genomic scenarios increased the expected genetic gain and the economic profit of the breeding program. In scenario II, the increase was much more pronounced and even in the most conservative implementation led to a 60% improvement in genetic gain and economic profit. This increase was in all cases associated with higher breeding costs.

Conclusions: While genomic selection is shown to have the potential to improve genetic gain in layer breeding programs, its implementation remains a business decision of the breeding company; the possible extra profit for the breeding company depends on whether the customers of breeding stock are willing to pay more for improved genetic quality.

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Related in: MedlinePlus

Profit and costs (collectively: return) in Scenario II. Genomic information of both sexes in relation to the return of the reference scenario (Ref) with different numbers of tested cocks and different sizes of calibration set.
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Figure 4: Profit and costs (collectively: return) in Scenario II. Genomic information of both sexes in relation to the return of the reference scenario (Ref) with different numbers of tested cocks and different sizes of calibration set.

Mentions: In scenario II, the generation interval was reduced to eight months. By assuming that performance testing of hens continued after selection, the costs related to performance testing were not reduced. The returns, costs and profit are shown relative to the reference scenario in Figure 4. The figure shows that with a calibration set of 2000 animals, the returns can be doubled, even with very few (800) male animals genotyped for selection. With the initially more realistic number of 500 animals in the calibration set, the returns increased by 60 to over 100% with 800 to 4800 cocks genotyped. The costs increased with increasing numbers of animals genotyped. With the lowest number of genotyped cocks, the costs were three times greater than in the reference scenario (€48.84 per animal unit) and with the highest number of genotyped cocks, they were more than quadrupled (€69.80 per animal unit).


Efficiency of genomic selection in an established commercial layer breeding program.

Sitzenstock F, Ytournel F, Sharifi AR, Cavero D, Täubert H, Preisinger R, Simianer H - Genet. Sel. Evol. (2013)

Profit and costs (collectively: return) in Scenario II. Genomic information of both sexes in relation to the return of the reference scenario (Ref) with different numbers of tested cocks and different sizes of calibration set.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3750290&req=5

Figure 4: Profit and costs (collectively: return) in Scenario II. Genomic information of both sexes in relation to the return of the reference scenario (Ref) with different numbers of tested cocks and different sizes of calibration set.
Mentions: In scenario II, the generation interval was reduced to eight months. By assuming that performance testing of hens continued after selection, the costs related to performance testing were not reduced. The returns, costs and profit are shown relative to the reference scenario in Figure 4. The figure shows that with a calibration set of 2000 animals, the returns can be doubled, even with very few (800) male animals genotyped for selection. With the initially more realistic number of 500 animals in the calibration set, the returns increased by 60 to over 100% with 800 to 4800 cocks genotyped. The costs increased with increasing numbers of animals genotyped. With the lowest number of genotyped cocks, the costs were three times greater than in the reference scenario (€48.84 per animal unit) and with the highest number of genotyped cocks, they were more than quadrupled (€69.80 per animal unit).

Bottom Line: In this case, the generation interval was reduced to eight months.This increase was in all cases associated with higher breeding costs.While genomic selection is shown to have the potential to improve genetic gain in layer breeding programs, its implementation remains a business decision of the breeding company; the possible extra profit for the breeding company depends on whether the customers of breeding stock are willing to pay more for improved genetic quality.

View Article: PubMed Central - HTML - PubMed

Affiliation: Department of Animal Sciences, University of Göttingen, 37075 Göttingen, Germany. fsitzen@gwdg.de

ABSTRACT

Background: In breeding programs for layers, selection of hens and cocks is based on recording phenotypic data from hens in different housing systems. Genomic information can provide additional information for selection and/or allow for a strong reduction in the generation interval. In this study, a typical conventional layer breeding program using a four-line cross was modeled and the expected genetic progress was derived deterministically with the software ZPLAN+. This non-genomic reference scenario was compared to two genomic breeding programs to determine the best strategy for implementing genomic information in layer breeding programs.

Results: In scenario I, genomic information was used in addition to all other information available in the conventional breeding program, so the generation interval was the same as in the reference scenario, i.e. 14.5 months. Here, we assumed that either only young cocks or young cocks and hens were genotyped as selection candidates. In scenario II, we assumed that breeders of both sexes were used at the biologically earliest possible age, so that at the time of selection only performance data of the parent generation and genomic information of the selection candidates were available. In this case, the generation interval was reduced to eight months. In both scenarios, the number of genotyped male selection candidates was varied between 800 and 4800 males and two sizes of the calibration set (500 or 2000 animals) were considered. All genomic scenarios increased the expected genetic gain and the economic profit of the breeding program. In scenario II, the increase was much more pronounced and even in the most conservative implementation led to a 60% improvement in genetic gain and economic profit. This increase was in all cases associated with higher breeding costs.

Conclusions: While genomic selection is shown to have the potential to improve genetic gain in layer breeding programs, its implementation remains a business decision of the breeding company; the possible extra profit for the breeding company depends on whether the customers of breeding stock are willing to pay more for improved genetic quality.

Show MeSH
Related in: MedlinePlus