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Complete genome sequence of the motile actinomycete Actinoplanes missouriensis 431(T) (= NBRC 102363(T)).

Yamamura H, Ohnishi Y, Ishikawa J, Ichikawa N, Ikeda H, Sekine M, Harada T, Horinouchi S, Otoguro M, Tamura T, Suzuki K, Hoshino Y, Arisawa A, Nakagawa Y, Fujita N, Hayakawa M - Stand Genomic Sci (2012)

Bottom Line: It is of further interest that members of Actinoplanes are prolific sources of novel antibiotics, enzymes, and other bioactive compounds.Here, we describe the features of A. missouriensis 431(T), together with the complete genome sequence and annotation.The 8,773,466 bp genome contains 8,125 protein-coding and 79 RNA genes.

View Article: PubMed Central - PubMed

Affiliation: Division of Applied Biological Sciences, Interdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, Yamanashi, Japan.

ABSTRACT
Actinoplanes missouriensis Couch 1963 is a well-characterized member of the genus Actinoplanes, which is of morphological interest because its members typically produce sporangia containing motile spores. The sporangiospores are motile by means of flagella and exhibit chemotactic properties. It is of further interest that members of Actinoplanes are prolific sources of novel antibiotics, enzymes, and other bioactive compounds. Here, we describe the features of A. missouriensis 431(T), together with the complete genome sequence and annotation. The 8,773,466 bp genome contains 8,125 protein-coding and 79 RNA genes.

No MeSH data available.


Related in: MedlinePlus

Phylogenetic tree highlighting the position of A. missouriensis 431T relative to Actinoplanes sp. strain SE50/110 and other type strains within the genus Actinoplanes. The tree was inferred from 1,351 aligned characters [14,15] of the 16S rRNA gene sequence under the maximum likelihood criterion [16] and rooted with the type strain of the neighboring genus Dactylosporangium. Only bootstrap values above 50% are shown (1,000 resamplings) at branching points. Lineages with type strain genome sequencing projects registered in GOLD [17] are labeled with an asterisk, those also listed as 'Complete and Published' with two asterisks.
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f1: Phylogenetic tree highlighting the position of A. missouriensis 431T relative to Actinoplanes sp. strain SE50/110 and other type strains within the genus Actinoplanes. The tree was inferred from 1,351 aligned characters [14,15] of the 16S rRNA gene sequence under the maximum likelihood criterion [16] and rooted with the type strain of the neighboring genus Dactylosporangium. Only bootstrap values above 50% are shown (1,000 resamplings) at branching points. Lineages with type strain genome sequencing projects registered in GOLD [17] are labeled with an asterisk, those also listed as 'Complete and Published' with two asterisks.

Mentions: Figure 1 shows the phylogenetic neighborhood of A. missouriensis 431T in a 16S rRNA gene-based tree. The sequences of five of the six 16S rRNA gene copies in the genome of A. missouriensis 431T are identical (one sequence differed by 4 nucleotides), but differ by 55 nucleotides (3.8%) from the previously published 16S rRNA gene sequence of NBRC 13243T (AB037008). The differences between the genome data and the reported 16S rRNA gene sequence are likely due to sequencing errors in the previously reported sequence data. The 16S rRNA sequence of strain 431T did not match significantly with any 16S rRNA gene sequences from environmental genomic samples and surveys available at the NCBI BLAST server (March 2012).


Complete genome sequence of the motile actinomycete Actinoplanes missouriensis 431(T) (= NBRC 102363(T)).

Yamamura H, Ohnishi Y, Ishikawa J, Ichikawa N, Ikeda H, Sekine M, Harada T, Horinouchi S, Otoguro M, Tamura T, Suzuki K, Hoshino Y, Arisawa A, Nakagawa Y, Fujita N, Hayakawa M - Stand Genomic Sci (2012)

Phylogenetic tree highlighting the position of A. missouriensis 431T relative to Actinoplanes sp. strain SE50/110 and other type strains within the genus Actinoplanes. The tree was inferred from 1,351 aligned characters [14,15] of the 16S rRNA gene sequence under the maximum likelihood criterion [16] and rooted with the type strain of the neighboring genus Dactylosporangium. Only bootstrap values above 50% are shown (1,000 resamplings) at branching points. Lineages with type strain genome sequencing projects registered in GOLD [17] are labeled with an asterisk, those also listed as 'Complete and Published' with two asterisks.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3569393&req=5

f1: Phylogenetic tree highlighting the position of A. missouriensis 431T relative to Actinoplanes sp. strain SE50/110 and other type strains within the genus Actinoplanes. The tree was inferred from 1,351 aligned characters [14,15] of the 16S rRNA gene sequence under the maximum likelihood criterion [16] and rooted with the type strain of the neighboring genus Dactylosporangium. Only bootstrap values above 50% are shown (1,000 resamplings) at branching points. Lineages with type strain genome sequencing projects registered in GOLD [17] are labeled with an asterisk, those also listed as 'Complete and Published' with two asterisks.
Mentions: Figure 1 shows the phylogenetic neighborhood of A. missouriensis 431T in a 16S rRNA gene-based tree. The sequences of five of the six 16S rRNA gene copies in the genome of A. missouriensis 431T are identical (one sequence differed by 4 nucleotides), but differ by 55 nucleotides (3.8%) from the previously published 16S rRNA gene sequence of NBRC 13243T (AB037008). The differences between the genome data and the reported 16S rRNA gene sequence are likely due to sequencing errors in the previously reported sequence data. The 16S rRNA sequence of strain 431T did not match significantly with any 16S rRNA gene sequences from environmental genomic samples and surveys available at the NCBI BLAST server (March 2012).

Bottom Line: It is of further interest that members of Actinoplanes are prolific sources of novel antibiotics, enzymes, and other bioactive compounds.Here, we describe the features of A. missouriensis 431(T), together with the complete genome sequence and annotation.The 8,773,466 bp genome contains 8,125 protein-coding and 79 RNA genes.

View Article: PubMed Central - PubMed

Affiliation: Division of Applied Biological Sciences, Interdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, Yamanashi, Japan.

ABSTRACT
Actinoplanes missouriensis Couch 1963 is a well-characterized member of the genus Actinoplanes, which is of morphological interest because its members typically produce sporangia containing motile spores. The sporangiospores are motile by means of flagella and exhibit chemotactic properties. It is of further interest that members of Actinoplanes are prolific sources of novel antibiotics, enzymes, and other bioactive compounds. Here, we describe the features of A. missouriensis 431(T), together with the complete genome sequence and annotation. The 8,773,466 bp genome contains 8,125 protein-coding and 79 RNA genes.

No MeSH data available.


Related in: MedlinePlus