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Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.

Lagier JC, Gimenez G, Robert C, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Bottom Line: H. massiliense is an aerobic rod.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 4,186,486 bp long genome (one chromosome but no plasmid) contains 3,847 protein-coding and 54 RNA genes, including 3 rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Aix-Marseille Université

ABSTRACT
Herbaspirillum massiliense strain JC206(T) sp. nov. is the type strain of H. massiliense sp. nov., a new species within the genus Herbaspirillum. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. H. massiliense is an aerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,186,486 bp long genome (one chromosome but no plasmid) contains 3,847 protein-coding and 54 RNA genes, including 3 rRNA genes.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of the chromosome. Genes are colored according to their COG categories as follows: information storage and processing (blue), cellular processing and signaling (green), metabolism (red) and poorly characterized (grey).
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f5: Graphical circular map of the chromosome. Genes are colored according to their COG categories as follows: information storage and processing (blue), cellular processing and signaling (green), metabolism (red) and poorly characterized (grey).

Mentions: The genome is 4,186,486 bp long (one chromosome but no plasmid) with a 59.73% GC content (Table 3 and Figure 5). Of the 3,901 predicted genes, 3,847 were protein-coding genes, and 54 were RNAs. A total of 2,924 genes (74.95%) were assigned a putative function. ORFans accounted for 312 (8.0%) of the genes. The remaining genes were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 4. The properties and the statistics of the genome are summarized in Tables 3 and 4.


Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.

Lagier JC, Gimenez G, Robert C, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Graphical circular map of the chromosome. Genes are colored according to their COG categories as follows: information storage and processing (blue), cellular processing and signaling (green), metabolism (red) and poorly characterized (grey).
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3569391&req=5

f5: Graphical circular map of the chromosome. Genes are colored according to their COG categories as follows: information storage and processing (blue), cellular processing and signaling (green), metabolism (red) and poorly characterized (grey).
Mentions: The genome is 4,186,486 bp long (one chromosome but no plasmid) with a 59.73% GC content (Table 3 and Figure 5). Of the 3,901 predicted genes, 3,847 were protein-coding genes, and 54 were RNAs. A total of 2,924 genes (74.95%) were assigned a putative function. ORFans accounted for 312 (8.0%) of the genes. The remaining genes were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 4. The properties and the statistics of the genome are summarized in Tables 3 and 4.

Bottom Line: H. massiliense is an aerobic rod.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 4,186,486 bp long genome (one chromosome but no plasmid) contains 3,847 protein-coding and 54 RNA genes, including 3 rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Aix-Marseille Université

ABSTRACT
Herbaspirillum massiliense strain JC206(T) sp. nov. is the type strain of H. massiliense sp. nov., a new species within the genus Herbaspirillum. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. H. massiliense is an aerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,186,486 bp long genome (one chromosome but no plasmid) contains 3,847 protein-coding and 54 RNA genes, including 3 rRNA genes.

No MeSH data available.


Related in: MedlinePlus