Limits...
Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.

Lagier JC, Gimenez G, Robert C, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Bottom Line: H. massiliense is an aerobic rod.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 4,186,486 bp long genome (one chromosome but no plasmid) contains 3,847 protein-coding and 54 RNA genes, including 3 rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Aix-Marseille Université

ABSTRACT
Herbaspirillum massiliense strain JC206(T) sp. nov. is the type strain of H. massiliense sp. nov., a new species within the genus Herbaspirillum. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. H. massiliense is an aerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,186,486 bp long genome (one chromosome but no plasmid) contains 3,847 protein-coding and 54 RNA genes, including 3 rRNA genes.

No MeSH data available.


Related in: MedlinePlus

Reference mass spectrum from H. massiliense strain JC206T. Spectra from 12 individual colonies were compared and a reference spectrum was generated.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
getmorefigures.php?uid=PMC3569391&req=5

f4: Reference mass spectrum from H. massiliense strain JC206T. Spectra from 12 individual colonies were compared and a reference spectrum was generated.

Mentions: Matrix-assisted laser-desorption/ionization time-of-flight (MALDI-TOF) MS protein analysis was carried out as previously described [30] using a Microflex spectrometer (Bruker Daltonics, Germany). Spectra were compared with the Bruker database that contained no spectrum from Herbaspirillum species. No significant score was obtained with any other taxon. We incremented our database with the spectrum from strain JC206 T (Figure 4).


Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.

Lagier JC, Gimenez G, Robert C, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Reference mass spectrum from H. massiliense strain JC206T. Spectra from 12 individual colonies were compared and a reference spectrum was generated.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3569391&req=5

f4: Reference mass spectrum from H. massiliense strain JC206T. Spectra from 12 individual colonies were compared and a reference spectrum was generated.
Mentions: Matrix-assisted laser-desorption/ionization time-of-flight (MALDI-TOF) MS protein analysis was carried out as previously described [30] using a Microflex spectrometer (Bruker Daltonics, Germany). Spectra were compared with the Bruker database that contained no spectrum from Herbaspirillum species. No significant score was obtained with any other taxon. We incremented our database with the spectrum from strain JC206 T (Figure 4).

Bottom Line: H. massiliense is an aerobic rod.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 4,186,486 bp long genome (one chromosome but no plasmid) contains 3,847 protein-coding and 54 RNA genes, including 3 rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Aix-Marseille Université

ABSTRACT
Herbaspirillum massiliense strain JC206(T) sp. nov. is the type strain of H. massiliense sp. nov., a new species within the genus Herbaspirillum. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. H. massiliense is an aerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,186,486 bp long genome (one chromosome but no plasmid) contains 3,847 protein-coding and 54 RNA genes, including 3 rRNA genes.

No MeSH data available.


Related in: MedlinePlus