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Non contiguous-finished genome sequence and description of Cellulomonas massiliensis sp. nov.

Lagier JC, Ramasamy D, Rivet R, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Bottom Line: This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 3,407,283 bp long genome contains 3,083 protein-coding and 48 RNA genes.

View Article: PubMed Central - PubMed

Affiliation: Aix-Marseille Université, Faculté de médecine, Marseille, France.

ABSTRACT
Cellulomonas massiliensis strain JC225(T) sp. nov. is the type strain of Cellulomonas massiliensis sp., a new species within the genus Cellulomonas. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. C. massiliensis is an aerobic rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,407,283 bp long genome contains 3,083 protein-coding and 48 RNA genes.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of the C. massiliensis strain JC225T genome. From outside to the center: scaffolds (red / grey), COG category of genes on the forward strand (three circles), genes on forward strand (blue circle), genes on the reverse strand (red circle), COG category on the reverse strand (three circles), G+C content.
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f5: Graphical circular map of the C. massiliensis strain JC225T genome. From outside to the center: scaffolds (red / grey), COG category of genes on the forward strand (three circles), genes on forward strand (blue circle), genes on the reverse strand (red circle), COG category on the reverse strand (three circles), G+C content.

Mentions: The genome is 3,407,283 bp long (1 chromosome, but no plasmid) with a 71.22% G+C content (Table 4 and Figure 5). It is composed of 5 scaffolds. Of the 3,131 predicted genes, 3,083 were protein-coding genes, and 48 were RNAs (1 rRNA operon and 45 tRNA genes). A total of 2,184 genes (70.84%) were assigned a putative function, and 256 genes were identified as ORFans (8.30%). The remaining genes were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 5. The properties and the statistics of the genome are summarized in Table 4 and 5.


Non contiguous-finished genome sequence and description of Cellulomonas massiliensis sp. nov.

Lagier JC, Ramasamy D, Rivet R, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Graphical circular map of the C. massiliensis strain JC225T genome. From outside to the center: scaffolds (red / grey), COG category of genes on the forward strand (three circles), genes on forward strand (blue circle), genes on the reverse strand (red circle), COG category on the reverse strand (three circles), G+C content.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3569388&req=5

f5: Graphical circular map of the C. massiliensis strain JC225T genome. From outside to the center: scaffolds (red / grey), COG category of genes on the forward strand (three circles), genes on forward strand (blue circle), genes on the reverse strand (red circle), COG category on the reverse strand (three circles), G+C content.
Mentions: The genome is 3,407,283 bp long (1 chromosome, but no plasmid) with a 71.22% G+C content (Table 4 and Figure 5). It is composed of 5 scaffolds. Of the 3,131 predicted genes, 3,083 were protein-coding genes, and 48 were RNAs (1 rRNA operon and 45 tRNA genes). A total of 2,184 genes (70.84%) were assigned a putative function, and 256 genes were identified as ORFans (8.30%). The remaining genes were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 5. The properties and the statistics of the genome are summarized in Table 4 and 5.

Bottom Line: This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 3,407,283 bp long genome contains 3,083 protein-coding and 48 RNA genes.

View Article: PubMed Central - PubMed

Affiliation: Aix-Marseille Université, Faculté de médecine, Marseille, France.

ABSTRACT
Cellulomonas massiliensis strain JC225(T) sp. nov. is the type strain of Cellulomonas massiliensis sp., a new species within the genus Cellulomonas. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. C. massiliensis is an aerobic rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,407,283 bp long genome contains 3,083 protein-coding and 48 RNA genes.

No MeSH data available.


Related in: MedlinePlus