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Genome sequence and description of Aeromicrobium massiliense sp. nov.

Ramasamy D, Kokcha S, Lagier JC, Nguyen TT, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Bottom Line: Aeromicrobium massiliense is an aerobic rod-shaped gram-positive bacterium.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 3,322,119 bp long genome contains 3,296 protein-coding and 51 RNA genes.

View Article: PubMed Central - PubMed

Affiliation: Aix-Marseille Université, Faculté de médecine, Marseille, France.

ABSTRACT
Aeromicrobium massiliense strain JC14(T)sp. nov. is the type strain of Aeromicrobium massiliense sp. nov., a new species within the genus Aeromicrobium. This strain, whose genome is described here, was isolated from the fecal microbiota of an asymptomatic patient. Aeromicrobium massiliense is an aerobic rod-shaped gram-positive bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,322,119 bp long genome contains 3,296 protein-coding and 51 RNA genes.

No MeSH data available.


Related in: MedlinePlus

Phylogenetic tree highlighting the position of Aeromicrobium massiliense strain JC14T relative to other type strains within the genus Aeromicrobium. GenBank accession numbers are indicated in parentheses. Sequences were aligned using CLUSTALW, and phylogenetic inferences obtained using the maximum-likelihood method within the MEGA software. Numbers at the nodes are bootstrap values obtained by repeating the analysis 500 times to generate a majority consensus tree. Nocardioides albus strain KCTC 9186 was used as outgroup. The scale bar represents a 1% nucleotide sequence divergence.
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f1: Phylogenetic tree highlighting the position of Aeromicrobium massiliense strain JC14T relative to other type strains within the genus Aeromicrobium. GenBank accession numbers are indicated in parentheses. Sequences were aligned using CLUSTALW, and phylogenetic inferences obtained using the maximum-likelihood method within the MEGA software. Numbers at the nodes are bootstrap values obtained by repeating the analysis 500 times to generate a majority consensus tree. Nocardioides albus strain KCTC 9186 was used as outgroup. The scale bar represents a 1% nucleotide sequence divergence.

Mentions: The strain exhibited nucleotide sequence similarities with validated Aeromicrobium species ranging from 95.37% with A. marinum (Bruns et al. 2003) [15] to 96.58% with A. erythreum (Miller et al. 1991) [8] (Figure 1), a value lower than the 98.7% 16S rRNA gene sequence threshold recommended by Stackebrandt and Ebers to delineate a new species without using DNA-DNA hybridization [3].


Genome sequence and description of Aeromicrobium massiliense sp. nov.

Ramasamy D, Kokcha S, Lagier JC, Nguyen TT, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Phylogenetic tree highlighting the position of Aeromicrobium massiliense strain JC14T relative to other type strains within the genus Aeromicrobium. GenBank accession numbers are indicated in parentheses. Sequences were aligned using CLUSTALW, and phylogenetic inferences obtained using the maximum-likelihood method within the MEGA software. Numbers at the nodes are bootstrap values obtained by repeating the analysis 500 times to generate a majority consensus tree. Nocardioides albus strain KCTC 9186 was used as outgroup. The scale bar represents a 1% nucleotide sequence divergence.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3569385&req=5

f1: Phylogenetic tree highlighting the position of Aeromicrobium massiliense strain JC14T relative to other type strains within the genus Aeromicrobium. GenBank accession numbers are indicated in parentheses. Sequences were aligned using CLUSTALW, and phylogenetic inferences obtained using the maximum-likelihood method within the MEGA software. Numbers at the nodes are bootstrap values obtained by repeating the analysis 500 times to generate a majority consensus tree. Nocardioides albus strain KCTC 9186 was used as outgroup. The scale bar represents a 1% nucleotide sequence divergence.
Mentions: The strain exhibited nucleotide sequence similarities with validated Aeromicrobium species ranging from 95.37% with A. marinum (Bruns et al. 2003) [15] to 96.58% with A. erythreum (Miller et al. 1991) [8] (Figure 1), a value lower than the 98.7% 16S rRNA gene sequence threshold recommended by Stackebrandt and Ebers to delineate a new species without using DNA-DNA hybridization [3].

Bottom Line: Aeromicrobium massiliense is an aerobic rod-shaped gram-positive bacterium.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 3,322,119 bp long genome contains 3,296 protein-coding and 51 RNA genes.

View Article: PubMed Central - PubMed

Affiliation: Aix-Marseille Université, Faculté de médecine, Marseille, France.

ABSTRACT
Aeromicrobium massiliense strain JC14(T)sp. nov. is the type strain of Aeromicrobium massiliense sp. nov., a new species within the genus Aeromicrobium. This strain, whose genome is described here, was isolated from the fecal microbiota of an asymptomatic patient. Aeromicrobium massiliense is an aerobic rod-shaped gram-positive bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,322,119 bp long genome contains 3,296 protein-coding and 51 RNA genes.

No MeSH data available.


Related in: MedlinePlus