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Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.

Mishra AK, Hugon P, Robert C, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Bottom Line: This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UMR CNRS 7278.

ABSTRACT
Peptoniphilus grossensis strain ph5(T) sp. nov., is the type strain of Peptoniphilus grossensis sp. nov., a new species within the Peptoniphilus genus. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. P. grossensis strain ph5 is a Gram-positive obligate anaerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes.

No MeSH data available.


Related in: MedlinePlus

Compared distribution of predicted genes of P. grossensis (blue), P. timonensis (red), P. harei (yellow), P. duerdenii (green) and P. lacrimalis (black) into COG categories.
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f6: Compared distribution of predicted genes of P. grossensis (blue), P. timonensis (red), P. harei (yellow), P. duerdenii (green) and P. lacrimalis (black) into COG categories.

Mentions: The draft genome sequence of P. grossensis strain ph5T has a similar size to that of P. duerdenii (2.10 vs 2.12 Mb, respectively), but a larger size than P. lacrimalis, P. harei and P. timonensis (1.69, 1.83 and 1.75 Mb, respectively). The G+C content of P. grossensis is larger than P. lacrimalis and P. timonensis (33.9, 29.91 and 30.7%, respectively) and comparable to P. duerdenii and P. harei (34.24 and 34.44, respectively). The gene content of P. grossensis is larger than those of P. duerdenii, P. lacrimalis, P. harei and P. timonensis (2,041, 1,988, 1,636, 1,765 and 1,922, respectively). The ratio of genes per MB of P. grossensis is larger to those of P. lacrimalis and P. harei (986, 968 and 964, respectively) and smaller to those of P. duerdenii and P. timonensis (1,009 and 1,111, respectively). However, the distribution of genes into COG categories was highly similar in all four compared genomes (Figure 6). In addition, P. grossensis shares a mean 82.0% (range 70-99%), 85.8% (range 70.7-100%), 86.03 (range 70-100%) and 87.78% (range 70.8-100%) sequence similarity with P. duerdenii, P. timonensis, P. harei and P. lacrimalis, respectively, at the genome level. On the basis of phenotypic, phylogenetic and genomic analyses, we formally propose the creation of Peptoniphilus grossensis sp. nov. which includes strain ph5T. This bacterium has been found in Marseille, France.


Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.

Mishra AK, Hugon P, Robert C, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Compared distribution of predicted genes of P. grossensis (blue), P. timonensis (red), P. harei (yellow), P. duerdenii (green) and P. lacrimalis (black) into COG categories.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3569384&req=5

f6: Compared distribution of predicted genes of P. grossensis (blue), P. timonensis (red), P. harei (yellow), P. duerdenii (green) and P. lacrimalis (black) into COG categories.
Mentions: The draft genome sequence of P. grossensis strain ph5T has a similar size to that of P. duerdenii (2.10 vs 2.12 Mb, respectively), but a larger size than P. lacrimalis, P. harei and P. timonensis (1.69, 1.83 and 1.75 Mb, respectively). The G+C content of P. grossensis is larger than P. lacrimalis and P. timonensis (33.9, 29.91 and 30.7%, respectively) and comparable to P. duerdenii and P. harei (34.24 and 34.44, respectively). The gene content of P. grossensis is larger than those of P. duerdenii, P. lacrimalis, P. harei and P. timonensis (2,041, 1,988, 1,636, 1,765 and 1,922, respectively). The ratio of genes per MB of P. grossensis is larger to those of P. lacrimalis and P. harei (986, 968 and 964, respectively) and smaller to those of P. duerdenii and P. timonensis (1,009 and 1,111, respectively). However, the distribution of genes into COG categories was highly similar in all four compared genomes (Figure 6). In addition, P. grossensis shares a mean 82.0% (range 70-99%), 85.8% (range 70.7-100%), 86.03 (range 70-100%) and 87.78% (range 70.8-100%) sequence similarity with P. duerdenii, P. timonensis, P. harei and P. lacrimalis, respectively, at the genome level. On the basis of phenotypic, phylogenetic and genomic analyses, we formally propose the creation of Peptoniphilus grossensis sp. nov. which includes strain ph5T. This bacterium has been found in Marseille, France.

Bottom Line: This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UMR CNRS 7278.

ABSTRACT
Peptoniphilus grossensis strain ph5(T) sp. nov., is the type strain of Peptoniphilus grossensis sp. nov., a new species within the Peptoniphilus genus. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. P. grossensis strain ph5 is a Gram-positive obligate anaerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes.

No MeSH data available.


Related in: MedlinePlus