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Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.

Mishra AK, Hugon P, Robert C, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Bottom Line: This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UMR CNRS 7278.

ABSTRACT
Peptoniphilus grossensis strain ph5(T) sp. nov., is the type strain of Peptoniphilus grossensis sp. nov., a new species within the Peptoniphilus genus. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. P. grossensis strain ph5 is a Gram-positive obligate anaerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of the chromosome. From the outside to the center: genes on the forward strand (colored by COG categories), genes on the reverse, RNA genes (rRNAs red, tRNAs green), G+C content, GC skew (purple negative values, olive positive values).
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f5: Graphical circular map of the chromosome. From the outside to the center: genes on the forward strand (colored by COG categories), genes on the reverse, RNA genes (rRNAs red, tRNAs green), G+C content, GC skew (purple negative values, olive positive values).

Mentions: The genome of P. grossensis sp. nov. strain ph5T is 2,101,866 bp long (1 chromosome, but no plasmid) with a 33.9% G + C content of (Figure 5 and Table 3). Of the 2,070 predicted genes, 2,041 were protein-coding genes, and 29 were RNAs. Three rRNA genes (one 16S rRNA, one 23S rRNA and one 5S rRNA) and 26 predicted tRNA genes were identified in the genome. A total of 1,439 genes (69.52%) were assigned a putative function. One hundred and fifty-five genes were identified as ORFans (7.6%). The remaining genes were annotated as hypothetical proteins. The properties and statistics of the genome are summarized in Table 3. The distribution of genes into COGs functional categories is presented in Table 4.


Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.

Mishra AK, Hugon P, Robert C, Raoult D, Fournier PE - Stand Genomic Sci (2012)

Graphical circular map of the chromosome. From the outside to the center: genes on the forward strand (colored by COG categories), genes on the reverse, RNA genes (rRNAs red, tRNAs green), G+C content, GC skew (purple negative values, olive positive values).
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3569384&req=5

f5: Graphical circular map of the chromosome. From the outside to the center: genes on the forward strand (colored by COG categories), genes on the reverse, RNA genes (rRNAs red, tRNAs green), G+C content, GC skew (purple negative values, olive positive values).
Mentions: The genome of P. grossensis sp. nov. strain ph5T is 2,101,866 bp long (1 chromosome, but no plasmid) with a 33.9% G + C content of (Figure 5 and Table 3). Of the 2,070 predicted genes, 2,041 were protein-coding genes, and 29 were RNAs. Three rRNA genes (one 16S rRNA, one 23S rRNA and one 5S rRNA) and 26 predicted tRNA genes were identified in the genome. A total of 1,439 genes (69.52%) were assigned a putative function. One hundred and fifty-five genes were identified as ORFans (7.6%). The remaining genes were annotated as hypothetical proteins. The properties and statistics of the genome are summarized in Table 3. The distribution of genes into COGs functional categories is presented in Table 4.

Bottom Line: This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes.

View Article: PubMed Central - PubMed

Affiliation: Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UMR CNRS 7278.

ABSTRACT
Peptoniphilus grossensis strain ph5(T) sp. nov., is the type strain of Peptoniphilus grossensis sp. nov., a new species within the Peptoniphilus genus. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. P. grossensis strain ph5 is a Gram-positive obligate anaerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,101,866-bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 33.9% and contains 2,041 protein-coding and 29 RNA genes, including 3 rRNA genes.

No MeSH data available.


Related in: MedlinePlus