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Web-based database and viewer of East asian copy number variations.

Kim JH, Hu HJ, Chung YJ - Genomics Inform (2012)

Bottom Line: We have discovered copy number variations (CNVs) in 3,578 Korean individuals with the Affymetrix Genome-Wide SNP array 5.0, and 4,003 copy number variation regions (CNVRs) were defined in a previous study.To explore the details of the variants easily in related studies, we built a database, cataloging the CNVs and related information.This system helps researchers browsing these variants with gene and structure variant annotations.

View Article: PubMed Central - PubMed

Affiliation: Department of Microbiology, Integrated Research Center for Genome Polymorphism, The Catholic University of Korea School of Medicine, Seoul 137-701, Korea.

ABSTRACT
We have discovered copy number variations (CNVs) in 3,578 Korean individuals with the Affymetrix Genome-Wide SNP array 5.0, and 4,003 copy number variation regions (CNVRs) were defined in a previous study. To explore the details of the variants easily in related studies, we built a database, cataloging the CNVs and related information. This system helps researchers browsing these variants with gene and structure variant annotations. Users can easily find specific regions with search options and verify them from system-integrated genome browsers with annotations.

No MeSH data available.


System Structures of East Asian Copy Number Variation Database (EACDB). JSP: PHP (Hypertext Preprocessor).
© Copyright Policy - open-access
Related In: Results  -  Collection

License 1 - License 2
getmorefigures.php?uid=PMC3475484&req=5

Figure 1: System Structures of East Asian Copy Number Variation Database (EACDB). JSP: PHP (Hypertext Preprocessor).

Mentions: Since the main search pages are written in Java Server Page (JSP) language, Apache Tomcat is needed for the application server and Apache HTTP server is needed for Gbrowse2 viewer pages (Fig. 1).


Web-based database and viewer of East asian copy number variations.

Kim JH, Hu HJ, Chung YJ - Genomics Inform (2012)

System Structures of East Asian Copy Number Variation Database (EACDB). JSP: PHP (Hypertext Preprocessor).
© Copyright Policy - open-access
Related In: Results  -  Collection

License 1 - License 2
Show All Figures
getmorefigures.php?uid=PMC3475484&req=5

Figure 1: System Structures of East Asian Copy Number Variation Database (EACDB). JSP: PHP (Hypertext Preprocessor).
Mentions: Since the main search pages are written in Java Server Page (JSP) language, Apache Tomcat is needed for the application server and Apache HTTP server is needed for Gbrowse2 viewer pages (Fig. 1).

Bottom Line: We have discovered copy number variations (CNVs) in 3,578 Korean individuals with the Affymetrix Genome-Wide SNP array 5.0, and 4,003 copy number variation regions (CNVRs) were defined in a previous study.To explore the details of the variants easily in related studies, we built a database, cataloging the CNVs and related information.This system helps researchers browsing these variants with gene and structure variant annotations.

View Article: PubMed Central - PubMed

Affiliation: Department of Microbiology, Integrated Research Center for Genome Polymorphism, The Catholic University of Korea School of Medicine, Seoul 137-701, Korea.

ABSTRACT
We have discovered copy number variations (CNVs) in 3,578 Korean individuals with the Affymetrix Genome-Wide SNP array 5.0, and 4,003 copy number variation regions (CNVRs) were defined in a previous study. To explore the details of the variants easily in related studies, we built a database, cataloging the CNVs and related information. This system helps researchers browsing these variants with gene and structure variant annotations. Users can easily find specific regions with search options and verify them from system-integrated genome browsers with annotations.

No MeSH data available.