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Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T)).

Chertkov O, Brown PJ, Kysela DT, de Pedro MA, Lucas S, Copeland A, Lapidus A, Del Rio TG, Tice H, Bruce D, Goodwin L, Pitluck S, Detter JC, Han C, Larimer F, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Ivanova N, Ovchinnikova G, Tindall BJ, Göker M, Klenk HP, Brun YV - Stand Genomic Sci (2011)

Bottom Line: The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth.Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a published genome sequence.The 3,455,622 bp long chromosome and 84,492 bp plasmid with a total of 3,222 protein-coding and 44 RNA genes were sequenced as part of the DOE Joint Genome Institute Program CSP 2008.

View Article: PubMed Central - PubMed

ABSTRACT
The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a published genome sequence. H. baltica is of special interest because it has a dimorphic life cycle and is a stalked, budding bacterium. The 3,455,622 bp long chromosome and 84,492 bp plasmid with a total of 3,222 protein-coding and 44 RNA genes were sequenced as part of the DOE Joint Genome Institute Program CSP 2008.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of the chromosome (plasmid not shown). From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
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f3: Graphical circular map of the chromosome (plasmid not shown). From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.

Mentions: The genome consists of a 3,455,622 bp long chromosome with a 45% G+C content and a 84,492 bp long plasmid with a 44% G+C content (Table 3 and Figure 3). Of the 3,266 genes predicted, 3,222 were protein-coding genes, and 44 RNAs; 35 pseudogenes were also identified. The majority of the protein-coding genes (71.6%) were assigned a putative function while the remaining ones were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 4.


Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T)).

Chertkov O, Brown PJ, Kysela DT, de Pedro MA, Lucas S, Copeland A, Lapidus A, Del Rio TG, Tice H, Bruce D, Goodwin L, Pitluck S, Detter JC, Han C, Larimer F, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Ivanova N, Ovchinnikova G, Tindall BJ, Göker M, Klenk HP, Brun YV - Stand Genomic Sci (2011)

Graphical circular map of the chromosome (plasmid not shown). From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3368421&req=5

f3: Graphical circular map of the chromosome (plasmid not shown). From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
Mentions: The genome consists of a 3,455,622 bp long chromosome with a 45% G+C content and a 84,492 bp long plasmid with a 44% G+C content (Table 3 and Figure 3). Of the 3,266 genes predicted, 3,222 were protein-coding genes, and 44 RNAs; 35 pseudogenes were also identified. The majority of the protein-coding genes (71.6%) were assigned a putative function while the remaining ones were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 4.

Bottom Line: The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth.Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a published genome sequence.The 3,455,622 bp long chromosome and 84,492 bp plasmid with a total of 3,222 protein-coding and 44 RNA genes were sequenced as part of the DOE Joint Genome Institute Program CSP 2008.

View Article: PubMed Central - PubMed

ABSTRACT
The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a published genome sequence. H. baltica is of special interest because it has a dimorphic life cycle and is a stalked, budding bacterium. The 3,455,622 bp long chromosome and 84,492 bp plasmid with a total of 3,222 protein-coding and 44 RNA genes were sequenced as part of the DOE Joint Genome Institute Program CSP 2008.

No MeSH data available.


Related in: MedlinePlus