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High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T)).

Earl AM, Desjardins CA, Fitzgerald MG, Arachchi HM, Zeng Q, Mehta T, Griggs A, Birren BW, Toney NC, Carr J, Posey J, Butler WR - Stand Genomic Sci (2011)

Bottom Line: A unique and interesting feature of this family is the presence of extremely long carbon-chain length mycolic acids bound in the cell wall.This report represents the second species in the genus to have its genome sequenced.The 3,567,567 bp long genome with 3,516 protein-coding and 49 RNA genes is part of the NIH Roadmap for Medical Research, Human Microbiome Project.

View Article: PubMed Central - PubMed

ABSTRACT
Segniliparus rugosus represents one of two species in the genus Segniliparus, the sole genus in the family Segniliparaceae. A unique and interesting feature of this family is the presence of extremely long carbon-chain length mycolic acids bound in the cell wall. S. rugosus is also a medically important species because it is an opportunistic pathogen associated with mammalian lung disease. This report represents the second species in the genus to have its genome sequenced. The 3,567,567 bp long genome with 3,516 protein-coding and 49 RNA genes is part of the NIH Roadmap for Medical Research, Human Microbiome Project.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of the genome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), GC content, GC skew.
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f3: Graphical circular map of the genome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), GC content, GC skew.

Mentions: This 3,567,567 bp draft genome has high G+C content (Table 3 and Figure 3) and is predicted to encode 3,571 genes, 98% of which are protein coding. Nearly 70% of predicted proteins have a functional prediction and COG functional categories have been assigned to 53% of predicted proteins (Table 4).


High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T)).

Earl AM, Desjardins CA, Fitzgerald MG, Arachchi HM, Zeng Q, Mehta T, Griggs A, Birren BW, Toney NC, Carr J, Posey J, Butler WR - Stand Genomic Sci (2011)

Graphical circular map of the genome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), GC content, GC skew.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3368418&req=5

f3: Graphical circular map of the genome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), GC content, GC skew.
Mentions: This 3,567,567 bp draft genome has high G+C content (Table 3 and Figure 3) and is predicted to encode 3,571 genes, 98% of which are protein coding. Nearly 70% of predicted proteins have a functional prediction and COG functional categories have been assigned to 53% of predicted proteins (Table 4).

Bottom Line: A unique and interesting feature of this family is the presence of extremely long carbon-chain length mycolic acids bound in the cell wall.This report represents the second species in the genus to have its genome sequenced.The 3,567,567 bp long genome with 3,516 protein-coding and 49 RNA genes is part of the NIH Roadmap for Medical Research, Human Microbiome Project.

View Article: PubMed Central - PubMed

ABSTRACT
Segniliparus rugosus represents one of two species in the genus Segniliparus, the sole genus in the family Segniliparaceae. A unique and interesting feature of this family is the presence of extremely long carbon-chain length mycolic acids bound in the cell wall. S. rugosus is also a medically important species because it is an opportunistic pathogen associated with mammalian lung disease. This report represents the second species in the genus to have its genome sequenced. The 3,567,567 bp long genome with 3,516 protein-coding and 49 RNA genes is part of the NIH Roadmap for Medical Research, Human Microbiome Project.

No MeSH data available.


Related in: MedlinePlus