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Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1(T)).

Schleheck D, Weiss M, Pitluck S, Bruce D, Land ML, Han S, Saunders E, Tapia R, Detter C, Brettin T, Han J, Woyke T, Goodwin L, Pennacchio L, Nolan M, Cook AM, Kjelleberg S, Thomas T - Stand Genomic Sci (2011)

Bottom Line: Parvibaculum lavamentivorans DS-1(T) is the type species of the novel genus Parvibaculum in the novel family Rhodobiaceae (formerly Phyllobacteriaceae) of the order Rhizobiales of Alphaproteobacteria.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 3,914,745 bp long genome with its predicted 3,654 protein coding genes is the first completed genome sequence of the genus Parvibaculum, and the first genome sequence of a representative of the family Rhodobiaceae.

View Article: PubMed Central - PubMed

ABSTRACT
Parvibaculum lavamentivorans DS-1(T) is the type species of the novel genus Parvibaculum in the novel family Rhodobiaceae (formerly Phyllobacteriaceae) of the order Rhizobiales of Alphaproteobacteria. Strain DS-1(T) is a non-pigmented, aerobic, heterotrophic bacterium and represents the first tier member of environmentally important bacterial communities that catalyze the complete degradation of synthetic laundry surfactants. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,914,745 bp long genome with its predicted 3,654 protein coding genes is the first completed genome sequence of the genus Parvibaculum, and the first genome sequence of a representative of the family Rhodobiaceae.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of the genome of P. lavamentivorans DS-1T. From outside to center: Genes on forward strand (color by COG categories), genes on reverse strand (color by COG categories), RNA genes (tRNA, green; rRNA, red; other RNAs, black), GC content, GC skew.
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f3: Graphical circular map of the genome of P. lavamentivorans DS-1T. From outside to center: Genes on forward strand (color by COG categories), genes on reverse strand (color by COG categories), RNA genes (tRNA, green; rRNA, red; other RNAs, black), GC content, GC skew.

Mentions: The genome of P. lavamentivorans DS-1T comprises one circular chromosome of 3,914,745 bp (62.33% GC content) (Figure 3), for which a total number of 3,714 genes were predicted. Of these predicted genes, 3,654 are protein-coding genes, and 2,723 of the protein-coding genes were assigned to a putative function and the remaining annotated as hypothetical proteins; 18 pseudogenes were also identified. A total of 60 RNA genes and one rRNA operon are predicted; the latter is reflective of the slow growth of P. lavamentivorans DS-1T [54,55]. Furthermore, one Clustered Regularly Interspaced Short Palindromic Repeats element (CRISPR) including associated protein genes were predicted. The properties and the statistics of the genome are summarized in Table 3, and the distribution of genes into COGs functional categories is presented in Table 4.


Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1(T)).

Schleheck D, Weiss M, Pitluck S, Bruce D, Land ML, Han S, Saunders E, Tapia R, Detter C, Brettin T, Han J, Woyke T, Goodwin L, Pennacchio L, Nolan M, Cook AM, Kjelleberg S, Thomas T - Stand Genomic Sci (2011)

Graphical circular map of the genome of P. lavamentivorans DS-1T. From outside to center: Genes on forward strand (color by COG categories), genes on reverse strand (color by COG categories), RNA genes (tRNA, green; rRNA, red; other RNAs, black), GC content, GC skew.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3368416&req=5

f3: Graphical circular map of the genome of P. lavamentivorans DS-1T. From outside to center: Genes on forward strand (color by COG categories), genes on reverse strand (color by COG categories), RNA genes (tRNA, green; rRNA, red; other RNAs, black), GC content, GC skew.
Mentions: The genome of P. lavamentivorans DS-1T comprises one circular chromosome of 3,914,745 bp (62.33% GC content) (Figure 3), for which a total number of 3,714 genes were predicted. Of these predicted genes, 3,654 are protein-coding genes, and 2,723 of the protein-coding genes were assigned to a putative function and the remaining annotated as hypothetical proteins; 18 pseudogenes were also identified. A total of 60 RNA genes and one rRNA operon are predicted; the latter is reflective of the slow growth of P. lavamentivorans DS-1T [54,55]. Furthermore, one Clustered Regularly Interspaced Short Palindromic Repeats element (CRISPR) including associated protein genes were predicted. The properties and the statistics of the genome are summarized in Table 3, and the distribution of genes into COGs functional categories is presented in Table 4.

Bottom Line: Parvibaculum lavamentivorans DS-1(T) is the type species of the novel genus Parvibaculum in the novel family Rhodobiaceae (formerly Phyllobacteriaceae) of the order Rhizobiales of Alphaproteobacteria.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 3,914,745 bp long genome with its predicted 3,654 protein coding genes is the first completed genome sequence of the genus Parvibaculum, and the first genome sequence of a representative of the family Rhodobiaceae.

View Article: PubMed Central - PubMed

ABSTRACT
Parvibaculum lavamentivorans DS-1(T) is the type species of the novel genus Parvibaculum in the novel family Rhodobiaceae (formerly Phyllobacteriaceae) of the order Rhizobiales of Alphaproteobacteria. Strain DS-1(T) is a non-pigmented, aerobic, heterotrophic bacterium and represents the first tier member of environmentally important bacterial communities that catalyze the complete degradation of synthetic laundry surfactants. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,914,745 bp long genome with its predicted 3,654 protein coding genes is the first completed genome sequence of the genus Parvibaculum, and the first genome sequence of a representative of the family Rhodobiaceae.

No MeSH data available.


Related in: MedlinePlus