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Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1(T)).

Schleheck D, Weiss M, Pitluck S, Bruce D, Land ML, Han S, Saunders E, Tapia R, Detter C, Brettin T, Han J, Woyke T, Goodwin L, Pennacchio L, Nolan M, Cook AM, Kjelleberg S, Thomas T - Stand Genomic Sci (2011)

Bottom Line: Parvibaculum lavamentivorans DS-1(T) is the type species of the novel genus Parvibaculum in the novel family Rhodobiaceae (formerly Phyllobacteriaceae) of the order Rhizobiales of Alphaproteobacteria.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 3,914,745 bp long genome with its predicted 3,654 protein coding genes is the first completed genome sequence of the genus Parvibaculum, and the first genome sequence of a representative of the family Rhodobiaceae.

View Article: PubMed Central - PubMed

ABSTRACT
Parvibaculum lavamentivorans DS-1(T) is the type species of the novel genus Parvibaculum in the novel family Rhodobiaceae (formerly Phyllobacteriaceae) of the order Rhizobiales of Alphaproteobacteria. Strain DS-1(T) is a non-pigmented, aerobic, heterotrophic bacterium and represents the first tier member of environmentally important bacterial communities that catalyze the complete degradation of synthetic laundry surfactants. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,914,745 bp long genome with its predicted 3,654 protein coding genes is the first completed genome sequence of the genus Parvibaculum, and the first genome sequence of a representative of the family Rhodobiaceae.

No MeSH data available.


Related in: MedlinePlus

Scanning electron micrograph of P. lavamentivorans DS-1T. Cells derived from a liquid culture that grew in acetate/mineral salts medium.
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f1: Scanning electron micrograph of P. lavamentivorans DS-1T. Cells derived from a liquid culture that grew in acetate/mineral salts medium.

Mentions: P. lavamentivorans DS-1T is a Gram-negative, non-pigmented, very small (approx. 1.0 × 0.2 µm), slightly curved rod-shaped bacterium that can be motile by means of a polar flagellum (Figure 1, Table 1). Strain DS-1T grows very slowly on complex medium (e.g. on LB- or peptone-agar plates) and forms pinpoint colonies only after more than two weeks of incubation. The organism can be quickly overgrown by other organisms. Larger colonies are obtained when the complex medium is supplemented with a surfactant, e.g. Tween 20 (see DSM-medium 884 [29]) or LAS [3]. When cultivated in liquid culture with mineral-salts medium, strain DS-1T grows within one week with the single carbon sources acetate, ethanol, or succinate, or alkanes, alkanols and alkanoates (C8 - C16); no sugars tested were utilized [3].


Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1(T)).

Schleheck D, Weiss M, Pitluck S, Bruce D, Land ML, Han S, Saunders E, Tapia R, Detter C, Brettin T, Han J, Woyke T, Goodwin L, Pennacchio L, Nolan M, Cook AM, Kjelleberg S, Thomas T - Stand Genomic Sci (2011)

Scanning electron micrograph of P. lavamentivorans DS-1T. Cells derived from a liquid culture that grew in acetate/mineral salts medium.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3368416&req=5

f1: Scanning electron micrograph of P. lavamentivorans DS-1T. Cells derived from a liquid culture that grew in acetate/mineral salts medium.
Mentions: P. lavamentivorans DS-1T is a Gram-negative, non-pigmented, very small (approx. 1.0 × 0.2 µm), slightly curved rod-shaped bacterium that can be motile by means of a polar flagellum (Figure 1, Table 1). Strain DS-1T grows very slowly on complex medium (e.g. on LB- or peptone-agar plates) and forms pinpoint colonies only after more than two weeks of incubation. The organism can be quickly overgrown by other organisms. Larger colonies are obtained when the complex medium is supplemented with a surfactant, e.g. Tween 20 (see DSM-medium 884 [29]) or LAS [3]. When cultivated in liquid culture with mineral-salts medium, strain DS-1T grows within one week with the single carbon sources acetate, ethanol, or succinate, or alkanes, alkanols and alkanoates (C8 - C16); no sugars tested were utilized [3].

Bottom Line: Parvibaculum lavamentivorans DS-1(T) is the type species of the novel genus Parvibaculum in the novel family Rhodobiaceae (formerly Phyllobacteriaceae) of the order Rhizobiales of Alphaproteobacteria.Here we describe the features of this organism, together with the complete genome sequence and annotation.The 3,914,745 bp long genome with its predicted 3,654 protein coding genes is the first completed genome sequence of the genus Parvibaculum, and the first genome sequence of a representative of the family Rhodobiaceae.

View Article: PubMed Central - PubMed

ABSTRACT
Parvibaculum lavamentivorans DS-1(T) is the type species of the novel genus Parvibaculum in the novel family Rhodobiaceae (formerly Phyllobacteriaceae) of the order Rhizobiales of Alphaproteobacteria. Strain DS-1(T) is a non-pigmented, aerobic, heterotrophic bacterium and represents the first tier member of environmentally important bacterial communities that catalyze the complete degradation of synthetic laundry surfactants. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,914,745 bp long genome with its predicted 3,654 protein coding genes is the first completed genome sequence of the genus Parvibaculum, and the first genome sequence of a representative of the family Rhodobiaceae.

No MeSH data available.


Related in: MedlinePlus