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Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria.

Grote J, Bayindirli C, Bergauer K, Carpintero de Moraes P, Chen H, D'Ambrosio L, Edwards B, Fernández-Gómez B, Hamisi M, Logares R, Nguyen D, Rii YM, Saeck E, Schutte C, Widner B, Church MJ, Steward GF, Karl DM, Delong EF, Eppley JM, Schuster SC, Kyrpides NC, Rappé MS - Stand Genomic Sci (2011)

Bottom Line: Here we describe preliminary features of the organism, together with the draft genome sequence and annotation.This is the second genome sequence of a member of the SAR116 clade.The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes.

View Article: PubMed Central - PubMed

ABSTRACT
Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of the organism, together with the draft genome sequence and annotation. This is the second genome sequence of a member of the SAR116 clade. The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes.

No MeSH data available.


Related in: MedlinePlus

Graphic circular map of the HIMB100 genome. From outside to the center: Genes on forward strand (colored by COG categories), Genes on reverse strand (colored by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew. The 10 contigs of the draft genome are ordered randomly.
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f3: Graphic circular map of the HIMB100 genome. From outside to the center: Genes on forward strand (colored by COG categories), Genes on reverse strand (colored by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew. The 10 contigs of the draft genome are ordered randomly.

Mentions: The genome is 2,458,945 bp long and comprises 10 contigs ranging in size from 30,717 to 1,167490 bp, with an overall GC content of 50.48 % (Table 3 and Figure 3). Of the 2,376 genes predicted, 2,334 were protein coding genes, and 42 were RNAs. Most protein coding genes (82.0%) were assigned putative functions, while the remaining genes were annotated as hypothetical proteins. The distribution of genes into COG functional categories is presented in Table 4.


Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria.

Grote J, Bayindirli C, Bergauer K, Carpintero de Moraes P, Chen H, D'Ambrosio L, Edwards B, Fernández-Gómez B, Hamisi M, Logares R, Nguyen D, Rii YM, Saeck E, Schutte C, Widner B, Church MJ, Steward GF, Karl DM, Delong EF, Eppley JM, Schuster SC, Kyrpides NC, Rappé MS - Stand Genomic Sci (2011)

Graphic circular map of the HIMB100 genome. From outside to the center: Genes on forward strand (colored by COG categories), Genes on reverse strand (colored by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew. The 10 contigs of the draft genome are ordered randomly.
© Copyright Policy - open-access
Related In: Results  -  Collection

License
Show All Figures
getmorefigures.php?uid=PMC3368413&req=5

f3: Graphic circular map of the HIMB100 genome. From outside to the center: Genes on forward strand (colored by COG categories), Genes on reverse strand (colored by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew. The 10 contigs of the draft genome are ordered randomly.
Mentions: The genome is 2,458,945 bp long and comprises 10 contigs ranging in size from 30,717 to 1,167490 bp, with an overall GC content of 50.48 % (Table 3 and Figure 3). Of the 2,376 genes predicted, 2,334 were protein coding genes, and 42 were RNAs. Most protein coding genes (82.0%) were assigned putative functions, while the remaining genes were annotated as hypothetical proteins. The distribution of genes into COG functional categories is presented in Table 4.

Bottom Line: Here we describe preliminary features of the organism, together with the draft genome sequence and annotation.This is the second genome sequence of a member of the SAR116 clade.The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes.

View Article: PubMed Central - PubMed

ABSTRACT
Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of the organism, together with the draft genome sequence and annotation. This is the second genome sequence of a member of the SAR116 clade. The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes.

No MeSH data available.


Related in: MedlinePlus