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Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1(T)).

Lucas-Elío P, Goodwin L, Woyke T, Pitluck S, Nolan M, Kyrpides NC, Detter JC, Copeland A, Teshima H, Bruce D, Detter C, Tapia R, Han S, Land ML, Ivanova N, Mikhailova N, Johnston AW, Sanchez-Amat A - Stand Genomic Sci (2012)

Bottom Line: Marinomonas mediterranea MMB-1(T) Solano & Sanchez-Amat 1999 belongs to the family Oceanospirillaceae within the phylum Proteobacteria.This species is of interest because it is the only species described in the genus Marinomonas to date that can synthesize melanin pigments, which is mediated by the activity of a tyrosinase.M. mediterranea expresses other oxidases of biotechnological interest, such as a multicopper oxidase with laccase activity and a novel L-lysine-epsilon-oxidase.

View Article: PubMed Central - PubMed

ABSTRACT
Marinomonas mediterranea MMB-1(T) Solano & Sanchez-Amat 1999 belongs to the family Oceanospirillaceae within the phylum Proteobacteria. This species is of interest because it is the only species described in the genus Marinomonas to date that can synthesize melanin pigments, which is mediated by the activity of a tyrosinase. M. mediterranea expresses other oxidases of biotechnological interest, such as a multicopper oxidase with laccase activity and a novel L-lysine-epsilon-oxidase. The 4,684,316 bp long genome harbors 4,228 protein-coding genes and 98 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

No MeSH data available.


Graphical circular map of the chromosome. From outside to the center: genes on forward strand (color by COG categories), genes on reverse strand (color by COG categories) RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
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f3: Graphical circular map of the chromosome. From outside to the center: genes on forward strand (color by COG categories), genes on reverse strand (color by COG categories) RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.

Mentions: The genome has no plasmids, and the 4,684,316 bp circular chromosome has a GC content of 44.13% (Table 3 and Figure 3). Of the 4,326 predicted genes, 4,228 were protein-coding genes, and 98 RNAs; 105 pseudogenes were also identified. The majority of the protein-coding genes (73%) were assigned with a putative function while those remaining were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 4.


Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1(T)).

Lucas-Elío P, Goodwin L, Woyke T, Pitluck S, Nolan M, Kyrpides NC, Detter JC, Copeland A, Teshima H, Bruce D, Detter C, Tapia R, Han S, Land ML, Ivanova N, Mikhailova N, Johnston AW, Sanchez-Amat A - Stand Genomic Sci (2012)

Graphical circular map of the chromosome. From outside to the center: genes on forward strand (color by COG categories), genes on reverse strand (color by COG categories) RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
© Copyright Policy
Related In: Results  -  Collection

Show All Figures
getmorefigures.php?uid=PMC3368407&req=5

f3: Graphical circular map of the chromosome. From outside to the center: genes on forward strand (color by COG categories), genes on reverse strand (color by COG categories) RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
Mentions: The genome has no plasmids, and the 4,684,316 bp circular chromosome has a GC content of 44.13% (Table 3 and Figure 3). Of the 4,326 predicted genes, 4,228 were protein-coding genes, and 98 RNAs; 105 pseudogenes were also identified. The majority of the protein-coding genes (73%) were assigned with a putative function while those remaining were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 4.

Bottom Line: Marinomonas mediterranea MMB-1(T) Solano & Sanchez-Amat 1999 belongs to the family Oceanospirillaceae within the phylum Proteobacteria.This species is of interest because it is the only species described in the genus Marinomonas to date that can synthesize melanin pigments, which is mediated by the activity of a tyrosinase.M. mediterranea expresses other oxidases of biotechnological interest, such as a multicopper oxidase with laccase activity and a novel L-lysine-epsilon-oxidase.

View Article: PubMed Central - PubMed

ABSTRACT
Marinomonas mediterranea MMB-1(T) Solano & Sanchez-Amat 1999 belongs to the family Oceanospirillaceae within the phylum Proteobacteria. This species is of interest because it is the only species described in the genus Marinomonas to date that can synthesize melanin pigments, which is mediated by the activity of a tyrosinase. M. mediterranea expresses other oxidases of biotechnological interest, such as a multicopper oxidase with laccase activity and a novel L-lysine-epsilon-oxidase. The 4,684,316 bp long genome harbors 4,228 protein-coding genes and 98 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

No MeSH data available.