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Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1(T)).

Lucas-Elío P, Goodwin L, Woyke T, Pitluck S, Nolan M, Kyrpides NC, Detter JC, Copeland A, Teshima H, Bruce D, Detter C, Tapia R, Han S, Land ML, Ivanova N, Mikhailova N, Johnston AW, Sanchez-Amat A - Stand Genomic Sci (2012)

Bottom Line: Marinomonas mediterranea MMB-1(T) Solano & Sanchez-Amat 1999 belongs to the family Oceanospirillaceae within the phylum Proteobacteria.This species is of interest because it is the only species described in the genus Marinomonas to date that can synthesize melanin pigments, which is mediated by the activity of a tyrosinase.M. mediterranea expresses other oxidases of biotechnological interest, such as a multicopper oxidase with laccase activity and a novel L-lysine-epsilon-oxidase.

View Article: PubMed Central - PubMed

ABSTRACT
Marinomonas mediterranea MMB-1(T) Solano & Sanchez-Amat 1999 belongs to the family Oceanospirillaceae within the phylum Proteobacteria. This species is of interest because it is the only species described in the genus Marinomonas to date that can synthesize melanin pigments, which is mediated by the activity of a tyrosinase. M. mediterranea expresses other oxidases of biotechnological interest, such as a multicopper oxidase with laccase activity and a novel L-lysine-epsilon-oxidase. The 4,684,316 bp long genome harbors 4,228 protein-coding genes and 98 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

No MeSH data available.


Related in: MedlinePlus

Phylogenetic tree highlighting the position of Marinomonas mediterranea strain MMB-1 in relation to other type (shown as T) and non-type strains within the genus Marinomonas. The non-type strains are those for which genomes have been sequenced. The tree was generated using the program MEGA version 4 [8]. The sequences were aligned using the CLUSTAL W program within MEGA software. The tree was generated using the neighbor-joining method. Numbers at branches indicate bootstrap values from 1,000 replicates. P. haloplanktis (X67024) was used as an outgroup.
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f1: Phylogenetic tree highlighting the position of Marinomonas mediterranea strain MMB-1 in relation to other type (shown as T) and non-type strains within the genus Marinomonas. The non-type strains are those for which genomes have been sequenced. The tree was generated using the program MEGA version 4 [8]. The sequences were aligned using the CLUSTAL W program within MEGA software. The tree was generated using the neighbor-joining method. Numbers at branches indicate bootstrap values from 1,000 replicates. P. haloplanktis (X67024) was used as an outgroup.

Mentions: M. mediterranea MMB-1T contains seven copies of the 16S rRNA gene. Of these, four were identical to each other, and hence they were considered as representative of this species. One of the copies differs from the others by the insertion of two nucleotides. Apart from that, the seven copies only show differences in two other positions. The representative 16S rRNA sequence only differs by a maximum of 4 nucleotides from the previously published 16S RNA sequence (AF063027), including two differences that correspond to ambiguous base calls. The phylogenetic neighborhood of M. mediterranea MMB-1T in a tree based on 16S rRNA sequences is shown in Figure 1.


Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1(T)).

Lucas-Elío P, Goodwin L, Woyke T, Pitluck S, Nolan M, Kyrpides NC, Detter JC, Copeland A, Teshima H, Bruce D, Detter C, Tapia R, Han S, Land ML, Ivanova N, Mikhailova N, Johnston AW, Sanchez-Amat A - Stand Genomic Sci (2012)

Phylogenetic tree highlighting the position of Marinomonas mediterranea strain MMB-1 in relation to other type (shown as T) and non-type strains within the genus Marinomonas. The non-type strains are those for which genomes have been sequenced. The tree was generated using the program MEGA version 4 [8]. The sequences were aligned using the CLUSTAL W program within MEGA software. The tree was generated using the neighbor-joining method. Numbers at branches indicate bootstrap values from 1,000 replicates. P. haloplanktis (X67024) was used as an outgroup.
© Copyright Policy
Related In: Results  -  Collection

Show All Figures
getmorefigures.php?uid=PMC3368407&req=5

f1: Phylogenetic tree highlighting the position of Marinomonas mediterranea strain MMB-1 in relation to other type (shown as T) and non-type strains within the genus Marinomonas. The non-type strains are those for which genomes have been sequenced. The tree was generated using the program MEGA version 4 [8]. The sequences were aligned using the CLUSTAL W program within MEGA software. The tree was generated using the neighbor-joining method. Numbers at branches indicate bootstrap values from 1,000 replicates. P. haloplanktis (X67024) was used as an outgroup.
Mentions: M. mediterranea MMB-1T contains seven copies of the 16S rRNA gene. Of these, four were identical to each other, and hence they were considered as representative of this species. One of the copies differs from the others by the insertion of two nucleotides. Apart from that, the seven copies only show differences in two other positions. The representative 16S rRNA sequence only differs by a maximum of 4 nucleotides from the previously published 16S RNA sequence (AF063027), including two differences that correspond to ambiguous base calls. The phylogenetic neighborhood of M. mediterranea MMB-1T in a tree based on 16S rRNA sequences is shown in Figure 1.

Bottom Line: Marinomonas mediterranea MMB-1(T) Solano & Sanchez-Amat 1999 belongs to the family Oceanospirillaceae within the phylum Proteobacteria.This species is of interest because it is the only species described in the genus Marinomonas to date that can synthesize melanin pigments, which is mediated by the activity of a tyrosinase.M. mediterranea expresses other oxidases of biotechnological interest, such as a multicopper oxidase with laccase activity and a novel L-lysine-epsilon-oxidase.

View Article: PubMed Central - PubMed

ABSTRACT
Marinomonas mediterranea MMB-1(T) Solano & Sanchez-Amat 1999 belongs to the family Oceanospirillaceae within the phylum Proteobacteria. This species is of interest because it is the only species described in the genus Marinomonas to date that can synthesize melanin pigments, which is mediated by the activity of a tyrosinase. M. mediterranea expresses other oxidases of biotechnological interest, such as a multicopper oxidase with laccase activity and a novel L-lysine-epsilon-oxidase. The 4,684,316 bp long genome harbors 4,228 protein-coding genes and 98 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

No MeSH data available.


Related in: MedlinePlus