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Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)).

Anderson I, Tindall BJ, Rohde M, Lucas S, Han J, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Peters L, Pati A, Mikhailova N, Pagani I, Teshima H, Han C, Tapia R, Land M, Woyke T, Klenk HP, Kyrpides N, Ivanova N - Stand Genomic Sci (2012)

Bottom Line: Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth.We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids.This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

View Article: PubMed Central - PubMed

ABSTRACT
Halopiger xanaduensis is the type species of the genus Halopiger and belongs to the euryarchaeal family Halobacteriaceae. H. xanaduensis strain SH-6, which is designated as the type strain, was isolated from the sediment of a salt lake in Inner Mongolia, Lake Shangmatala. Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth. We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids. This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of the chromosome. From outside to center: Genes on forward strand (colored by COG categories), genes on reverse strand (colored by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, and GC skew.
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f3: Graphical circular map of the chromosome. From outside to center: Genes on forward strand (colored by COG categories), genes on reverse strand (colored by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, and GC skew.

Mentions: The genome includes one circular chromosome and three plasmids, for a total size of 4,355,268 bp (Table 3, Table 4). A map of the chromosome is shown in Figure 3 and maps of the plasmids are shown in Figures 4, 5, and 6. A total of 4,370 genes were predicted, 4,310 of which are protein-coding genes and 60 of which are RNA genes. There are three ribosomal RNA operons with one additional copy of 5S rRNA. Putative functions were assigned to 2,560 protein coding genes, with the remaining genes annotated as hypothetical proteins. There are 89 pseudogenes, accounting for 2.06% of protein-coding genes. Table 5 shows the distribution of genes in COG categories.


Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)).

Anderson I, Tindall BJ, Rohde M, Lucas S, Han J, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Peters L, Pati A, Mikhailova N, Pagani I, Teshima H, Han C, Tapia R, Land M, Woyke T, Klenk HP, Kyrpides N, Ivanova N - Stand Genomic Sci (2012)

Graphical circular map of the chromosome. From outside to center: Genes on forward strand (colored by COG categories), genes on reverse strand (colored by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, and GC skew.
© Copyright Policy
Related In: Results  -  Collection

Show All Figures
getmorefigures.php?uid=PMC3368405&req=5

f3: Graphical circular map of the chromosome. From outside to center: Genes on forward strand (colored by COG categories), genes on reverse strand (colored by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, and GC skew.
Mentions: The genome includes one circular chromosome and three plasmids, for a total size of 4,355,268 bp (Table 3, Table 4). A map of the chromosome is shown in Figure 3 and maps of the plasmids are shown in Figures 4, 5, and 6. A total of 4,370 genes were predicted, 4,310 of which are protein-coding genes and 60 of which are RNA genes. There are three ribosomal RNA operons with one additional copy of 5S rRNA. Putative functions were assigned to 2,560 protein coding genes, with the remaining genes annotated as hypothetical proteins. There are 89 pseudogenes, accounting for 2.06% of protein-coding genes. Table 5 shows the distribution of genes in COG categories.

Bottom Line: Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth.We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids.This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

View Article: PubMed Central - PubMed

ABSTRACT
Halopiger xanaduensis is the type species of the genus Halopiger and belongs to the euryarchaeal family Halobacteriaceae. H. xanaduensis strain SH-6, which is designated as the type strain, was isolated from the sediment of a salt lake in Inner Mongolia, Lake Shangmatala. Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth. We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids. This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

No MeSH data available.


Related in: MedlinePlus