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Complete Genome Sequence of Clostridium clariflavum DSM 19732.

Izquierdo JA, Goodwin L, Davenport KW, Teshima H, Bruce D, Detter C, Tapia R, Han S, Land M, Hauser L, Jeffries CD, Han J, Pitluck S, Nolan M, Chen A, Huntemann M, Mavromatis K, Mikhailova N, Liolios K, Woyke T, Lynd LR - Stand Genomic Sci (2012)

Bottom Line: Clostridium clariflavum is a Cluster III Clostridium within the family Clostridiaceae isolated from thermophilic anaerobic sludge (Shiratori et al, 2009).This species is of interest because of its similarity to the model cellulolytic organism Clostridium thermocellum and for the ability of environmental isolates to break down cellulose and hemicellulose.Here we describe features of the 4,897,678 bp long genome and its annotation, consisting of 4,131 protein-coding and 98 RNA genes, for the type strain DSM 19732.

View Article: PubMed Central - PubMed

ABSTRACT
Clostridium clariflavum is a Cluster III Clostridium within the family Clostridiaceae isolated from thermophilic anaerobic sludge (Shiratori et al, 2009). This species is of interest because of its similarity to the model cellulolytic organism Clostridium thermocellum and for the ability of environmental isolates to break down cellulose and hemicellulose. Here we describe features of the 4,897,678 bp long genome and its annotation, consisting of 4,131 protein-coding and 98 RNA genes, for the type strain DSM 19732.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of the genome. From outside to the center; Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
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f3: Graphical circular map of the genome. From outside to the center; Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.

Mentions: The genome of Clostridium clariflavum DSM 19732 is comprised of one circular chromosome of 4,897,678 bp in length with 35.6% GC content (Table 3 and Figure 3). The sequences of 16S rRNA gene (Accession number AB186359) and a family 48 glycosyl hydrolase (Accession number GQ487569) genes have been previously reported [2,3], and contain 3 mismatches each. The genome size of C. clariflavum is much larger than that of the cellulolytic thermophile and close relative Clostridium thermocellum ATCC 27405 (3.8Mb, 38.9%GC). The chromosome of C. clariflavum was predicted to contain 4,242 coding gene sequences with 6 rRNA operons and 60 tRNA genes (Table 3). The properties and the statistics of the genome are summarized in Tables 3 and 4.


Complete Genome Sequence of Clostridium clariflavum DSM 19732.

Izquierdo JA, Goodwin L, Davenport KW, Teshima H, Bruce D, Detter C, Tapia R, Han S, Land M, Hauser L, Jeffries CD, Han J, Pitluck S, Nolan M, Chen A, Huntemann M, Mavromatis K, Mikhailova N, Liolios K, Woyke T, Lynd LR - Stand Genomic Sci (2012)

Graphical circular map of the genome. From outside to the center; Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
© Copyright Policy
Related In: Results  -  Collection

Show All Figures
getmorefigures.php?uid=PMC3368404&req=5

f3: Graphical circular map of the genome. From outside to the center; Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
Mentions: The genome of Clostridium clariflavum DSM 19732 is comprised of one circular chromosome of 4,897,678 bp in length with 35.6% GC content (Table 3 and Figure 3). The sequences of 16S rRNA gene (Accession number AB186359) and a family 48 glycosyl hydrolase (Accession number GQ487569) genes have been previously reported [2,3], and contain 3 mismatches each. The genome size of C. clariflavum is much larger than that of the cellulolytic thermophile and close relative Clostridium thermocellum ATCC 27405 (3.8Mb, 38.9%GC). The chromosome of C. clariflavum was predicted to contain 4,242 coding gene sequences with 6 rRNA operons and 60 tRNA genes (Table 3). The properties and the statistics of the genome are summarized in Tables 3 and 4.

Bottom Line: Clostridium clariflavum is a Cluster III Clostridium within the family Clostridiaceae isolated from thermophilic anaerobic sludge (Shiratori et al, 2009).This species is of interest because of its similarity to the model cellulolytic organism Clostridium thermocellum and for the ability of environmental isolates to break down cellulose and hemicellulose.Here we describe features of the 4,897,678 bp long genome and its annotation, consisting of 4,131 protein-coding and 98 RNA genes, for the type strain DSM 19732.

View Article: PubMed Central - PubMed

ABSTRACT
Clostridium clariflavum is a Cluster III Clostridium within the family Clostridiaceae isolated from thermophilic anaerobic sludge (Shiratori et al, 2009). This species is of interest because of its similarity to the model cellulolytic organism Clostridium thermocellum and for the ability of environmental isolates to break down cellulose and hemicellulose. Here we describe features of the 4,897,678 bp long genome and its annotation, consisting of 4,131 protein-coding and 98 RNA genes, for the type strain DSM 19732.

No MeSH data available.


Related in: MedlinePlus