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Draft genome sequence of Arthrospira platensis C1 (PCC9438).

Cheevadhanarak S, Paithoonrangsarid K, Prommeenate P, Kaewngam W, Musigkain A, Tragoonrung S, Tabata S, Kaneko T, Chaijaruwanich J, Sangsrakru D, Tangphatsornruang S, Chanprasert J, Tongsima S, Kusonmano K, Jeamton W, Dulsawat S, Klanchui A, Vorapreeda T, Chumchua V, Khannapho C, Thammarongtham C, Plengvidhya V, Subudhi S, Hongsthong A, Ruengjitchatchawalya M, Meechai A, Senachak J, Tanticharoen M - Stand Genomic Sci (2012)

Bottom Line: Arthrospira platensis is a cyanobacterium that is extensively cultivated outdoors on a large commercial scale for consumption as a food for humans and animals.The A. platensis C1 genome contains 6,089,210 bp including 6,108 protein-coding genes and 45 RNA genes, and no plasmids.The genome information has been used for further comparative analysis, particularly of metabolic pathways, photosynthetic efficiency and barriers to gene transfer.

View Article: PubMed Central - PubMed

ABSTRACT
Arthrospira platensis is a cyanobacterium that is extensively cultivated outdoors on a large commercial scale for consumption as a food for humans and animals. It can be grown in monoculture under highly alkaline conditions, making it attractive for industrial production. Here we describe the complete genome sequence of A. platensis C1 strain and its annotation. The A. platensis C1 genome contains 6,089,210 bp including 6,108 protein-coding genes and 45 RNA genes, and no plasmids. The genome information has been used for further comparative analysis, particularly of metabolic pathways, photosynthetic efficiency and barriers to gene transfer.

No MeSH data available.


Related in: MedlinePlus

Graphical circular map of the chromosome of Arthrospira platensis C1. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
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f2: Graphical circular map of the chromosome of Arthrospira platensis C1. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.

Mentions: The genome atlas of A. platensis C1 is shown in Figure 2. The atlas was created based on one FASTA file containing the nucleotide sequences in one piece. Together with the annotation file, positions of genes were used for the map.


Draft genome sequence of Arthrospira platensis C1 (PCC9438).

Cheevadhanarak S, Paithoonrangsarid K, Prommeenate P, Kaewngam W, Musigkain A, Tragoonrung S, Tabata S, Kaneko T, Chaijaruwanich J, Sangsrakru D, Tangphatsornruang S, Chanprasert J, Tongsima S, Kusonmano K, Jeamton W, Dulsawat S, Klanchui A, Vorapreeda T, Chumchua V, Khannapho C, Thammarongtham C, Plengvidhya V, Subudhi S, Hongsthong A, Ruengjitchatchawalya M, Meechai A, Senachak J, Tanticharoen M - Stand Genomic Sci (2012)

Graphical circular map of the chromosome of Arthrospira platensis C1. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
© Copyright Policy
Related In: Results  -  Collection

Show All Figures
getmorefigures.php?uid=PMC3368399&req=5

f2: Graphical circular map of the chromosome of Arthrospira platensis C1. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew.
Mentions: The genome atlas of A. platensis C1 is shown in Figure 2. The atlas was created based on one FASTA file containing the nucleotide sequences in one piece. Together with the annotation file, positions of genes were used for the map.

Bottom Line: Arthrospira platensis is a cyanobacterium that is extensively cultivated outdoors on a large commercial scale for consumption as a food for humans and animals.The A. platensis C1 genome contains 6,089,210 bp including 6,108 protein-coding genes and 45 RNA genes, and no plasmids.The genome information has been used for further comparative analysis, particularly of metabolic pathways, photosynthetic efficiency and barriers to gene transfer.

View Article: PubMed Central - PubMed

ABSTRACT
Arthrospira platensis is a cyanobacterium that is extensively cultivated outdoors on a large commercial scale for consumption as a food for humans and animals. It can be grown in monoculture under highly alkaline conditions, making it attractive for industrial production. Here we describe the complete genome sequence of A. platensis C1 strain and its annotation. The A. platensis C1 genome contains 6,089,210 bp including 6,108 protein-coding genes and 45 RNA genes, and no plasmids. The genome information has been used for further comparative analysis, particularly of metabolic pathways, photosynthetic efficiency and barriers to gene transfer.

No MeSH data available.


Related in: MedlinePlus